LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00792	ATGGGTTGCTTATGCTCTAAGAGTGCAGCTGTAGAGGACAGCAAGGTAGGAGTCACTAAGAAATTGCAATCGTATAGCACAAGGCCTTCAGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGATGAAGGTGGGGCTAAAGATGTGATAACAGACAGTGGTCATGTAAAAGGTTCATTGATTGACAAGAAGGCCAATGGTTCAGGGCAGTTGTATGTTGATCATGGTGGGAAGAAGAAAACAGAGAAGCCTGAAGTGACTGTTGTGGATCATATTGGCCCTGGAAGAATTCCAAAGGCTATAGAAGGAGAGCAAGTTGCAGCTGGATGGCCAGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCTCGGAGAGCGAATAATTTTGAGAAGTTGGACAAAATTGGACAAGGAACTTATAGTACTGTTTATAAGGCAAGGGATGTGATTAACCGCAAGTTTGTTGCATTGAAAAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTGAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATTATAAAATTGGAGGGTTTGGTAACGTCTCATATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCACGATCTTACAGGACTTGCATCAAATCCGGAAATCAAGTTCTCTGAAGCACAGCTAAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTGCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAATCTTAAAAATAGCTGATTTTGGTTTGGCAAGTTTTTTTGACCCCCACCACAGTGTTCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCAAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGTGAACTATATACTGGAAGGCCCATTTTACCAGGAAAAACAGAGGTTGAGCAATTGCATCGAATTTTTAAACTTTGCGGCTCACCATCTGATGAGTATTGGCTTAAATTGCGGCTGTCACATTCAACAGTATTCCGGCCACCACACCATTATAGACGATGTGTTGCTGAGACATTTAAGGACTACCCATCTACTGCTGTAAAGCTTATAGAGACCCTGCTTTCGGTAGAGCCGGCACAACGAGGAACTGCAGCAGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAGCCTGTGCCTTGTGATCCATCAAGTTTACCAAAATATGCTCCCAGTAAGGAAATTGATGCTAAGTTACGAGATGAAGCCAGAAGGCAAGGAGCTGGTGGAGGTAGGGACCAAAAAGTTGCCTTGGGAGTTAGACAAGAAAAAGGGCATAGGACTAGTGTCACAGTAAAAGACAATGCCGACCCAGCTGTATCAGTACAGCAAGGACGTTATTCCAGCTCAAAGAACCGAAGTGAATTATACAACCCTCATAGGGGAGCAGTGTCTGGGATTCTGGTTTTCCCTCACAAACAGTCAGAAGATGTTAAAGCAATGGAAAATAGTTTCTCTGGGCATATATATAAGAAGCCATCGCATTCAGGGCCATTGGTTCCTGGTTCTGTTTGGGCAAAAGGTGCAAAGGAAGTTGATGATGTACCTCCTACTTCAATCAGAGGAAATCTAGCAAAACTATCTGGGCTAGTGGCATCTAGGACATTGCTGCCAGAAGATCAGCAGGACAAAACAGTTCACTTGCACCACAAAAAACCAAGTGAAGTAAGAAAATCAATGGAGTCAACTACTGGATCAGAGTCCAGAAGAAGACAGGAACAAAAACGGATTGTTGATCACAATCAAATCGAAAGCAGAAGGGTCCCCACCGAAAAATCAACCCCGGGTGGGAGGGAGTCGATGGGAAACAACAAGATATACCTCTCAGGACCATTAATGGTGTCATCAAGCAACATGGATCAGATGCTGAAAGAGCATGATCGAAAGATCCAAGAGTTTTCAAGACGAGCAAGAATTGATAAGTCAAGAGGTGAGAAAGTTCGTGCACAGCGGAAGTGGTGA	2097	0.4359	MGCLCSKSAAVEDSKVGVTKKLQSYSTRPSELNVLRLNSTRRVDEGGAKDVITDSGHVKGSLIDKKANGSGQLYVDHGGKKKTEKPEVTVVDHIGPGRIPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRRANNFEKLDKIGQGTYSTVYKARDVINRKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLVTSHMSRSLYLVFEYMEHDLTGLASNPEIKFSEAQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDEYWLKLRLSHSTVFRPPHHYRRCVAETFKDYPSTAVKLIETLLSVEPAQRGTAAAALKSEFFTSEPVPCDPSSLPKYAPSKEIDAKLRDEARRQGAGGGRDQKVALGVRQEKGHRTSVTVKDNADPAVSVQQGRYSSSKNRSELYNPHRGAVSGILVFPHKQSEDVKAMENSFSGHIYKKPSHSGPLVPGSVWAKGAKEVDDVPPTSIRGNLAKLSGLVASRTLLPEDQQDKTVHLHHKKPSEVRKSMESTTGSESRRRQEQKRIVDHNQIESRRVPTEKSTPGGRESMGNNKIYLSGPLMVSSSNMDQMLKEHDRKIQEFSRRARIDKSRGEKVRAQRKW	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00792	698	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	255	267	IPR008271	GO:0004672\|GO:0006468
	Vian5g00792	698	SMART	serkin_6	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00792	698	ProSitePatterns	Protein kinases ATP-binding region signature.	141	164	IPR017441	GO:0005524
	Vian5g00792	698	MobiDBLite	consensus disorder prediction	585	638	-	-
	Vian5g00792	698	MobiDBLite	consensus disorder prediction	467	503	-	-
	Vian5g00792	698	CDD	STKc_CDK9_like	135	419	-	-
	Vian5g00792	698	MobiDBLite	consensus disorder prediction	583	651	-	-
	Vian5g00792	698	MobiDBLite	consensus disorder prediction	675	698	-	-
	Vian5g00792	698	Gene3D	Phosphorylase Kinase; domain 1	122	217	-	-
	Vian5g00792	698	MobiDBLite	consensus disorder prediction	675	692	-	-
	Vian5g00792	698	Gene3D	Transferase(Phosphotransferase) domain 1	218	456	-	-
	Vian5g00792	698	SUPERFAMILY	Protein kinase-like (PK-like)	128	427	IPR011009	-
	Vian5g00792	698	FunFam	probable serine/threonine-protein kinase At1g54610	122	217	-	-
	Vian5g00792	698	FunFam	probable serine/threonine-protein kinase At1g54610	218	458	-	-
	Vian5g00792	698	MobiDBLite	consensus disorder prediction	479	501	-	-
	Vian5g00792	698	Pfam	Protein kinase domain	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00792	698	ProSiteProfiles	Protein kinase domain profile.	135	419	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian5g00792	698	PANTHER	CELL DIVISION PROTEIN KINASE	133	425	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00792	Vian-Chr5	27709895	27714559	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00792	127	461	Core Cell Cycle Gene Families	AT5G10270	48.148	2.53e-109	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vian5g00792		Pkinase	1.5e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00792	-		-	gmx:100807590	1216.45