Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00789 ATGCCCGATGTTGCAGAGGCCCTAAATCTTAAAGAAATAGTTCTTGAAGGATGCATACGGCTCCGAAAACTCAGTCCATCGATTGGTCTTCTGAGCAAGCTTACTATTTTGAATTTGAAAAACTGTCAAAACTTAGTAAGCTTACCCAATAGCATAGTGGGCCTGAATTCTCTTGAATATCTGAGTGTCTATGGTTGTTCAAATCTGTTTAATGAGTTATTAGGTGAACCAAGTAACACAGAGCATTTGAAGAAGCTTTTTTCAGTTGAAGGTCCTATTCATTTCCACTCAAGAGAGTCAGTTAGTTGTCTGTTACCATCCTCTCTTACTCTCCCTTGTTTGCGTGAACTCGATCTAAGATTCTGTAACTTAGTTGAAATCCCTGATGCCATTGGAAAGTTACGTTGCTTAGAAAAGTTAAATTTGAAGGGAAACAATTTTGTTACATTGCCTAACCTCAAGGACCTTTTCAGACTGTATTATTTAAACTTACAGCACTGCAAGCGATTGAAATACTTGCCTGACCTCCCTTCACGGACTCACTTGCCCTTAAATCTTTACTCGTATCCGATGCAATATTTTGAAGGCTTCATCTATAAGGTGACAAACGAAGATGAATGTATGGCTGGATTAAGGATGTTCAACTGCCCAGAAATAGTTGAGAGGGAACAGTGCACTAGCATGACTTTTTCATGGATGCTACAAATGGTTCAGTCATGGTACAACTCGGAATGTCTTACATCCCTTCCATCCCTCAAAAGTCTTGGAAGTATTATCCCTGGAAGTGAAATACCAATGTGGTTCAACAATGAGCTTGTGAGCATGGACAATTCAATAATCATAGATGTCTCTCCTTTTGTGTATGACAATAATTGGGTAGGTGTTGTGTGCTGTGCAATACTCGGTGAAGATCTTTACAGAACAAGAATTCTTGAGGATTCGAGAAGGGATCTATCTGTGGAGCACTCAGATCATATGTGCCTATTTTATTACTCTCGTCAACAGTTCTGCCATGAACAAGGCATATTTCGGGGCAAACTTAATACACATGACTTGAGTTTGACATTTAGATTATATGACGTGGTAGTACTTTGTGCATACATGAAGGATAGGGACGAGGGATTTTATGATTTTGAAGTGAAAAAATACGGGTATCGGTGGGTTAAAAAGCAGGATCTACAGTGA 1185 0.3924 MPDVAEALNLKEIVLEGCIRLRKLSPSIGLLSKLTILNLKNCQNLVSLPNSIVGLNSLEYLSVYGCSNLFNELLGEPSNTEHLKKLFSVEGPIHFHSRESVSCLLPSSLTLPCLRELDLRFCNLVEIPDAIGKLRCLEKLNLKGNNFVTLPNLKDLFRLYYLNLQHCKRLKYLPDLPSRTHLPLNLYSYPMQYFEGFIYKVTNEDECMAGLRMFNCPEIVEREQCTSMTFSWMLQMVQSWYNSECLTSLPSLKSLGSIIPGSEIPMWFNNELVSMDNSIIIDVSPFVYDNNWVGVVCCAILGEDLYRTRILEDSRRDLSVEHSDHMCLFYYSRQQFCHEQGIFRGKLNTHDLSLTFRLYDVVVLCAYMKDRDEGFYDFEVKKYGYRWVKKQDLQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00789 394 Pfam C-JID domain 259 393 IPR045344 -
Vian5g00789 394 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 104 256 - -
Vian5g00789 394 Pfam Leucine Rich Repeat 33 55 IPR001611 GO:0005515
Vian5g00789 394 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515
Vian5g00789 394 ProSiteProfiles Leucine-rich repeat profile. 136 157 IPR001611 GO:0005515
Vian5g00789 394 SUPERFAMILY L domain-like 6 176 - -
Vian5g00789 394 Gene3D Ribonuclease Inhibitor 93 280 IPR032675 -
Vian5g00789 394 Gene3D Ribonuclease Inhibitor 2 90 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00789 Vian-Chr5 27651979 27653247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00789 1 174 WRKY Transcription Factor Family AT4G12020 37.778 9.56e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00789 - - vum:124845879 526.168