Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00787 ATGTCTTCCAACGCCATCGTCCAATACACCGCTTCTTCATCTCATGCAATTAACAGATACGATGTATTTGTGAGCTTCCGTGGTGAAGACACACGCAACAACTTCACTGGTTTTCTCTTTCAAGCTCTCCGTAGAAAAGCCATCTATGCCTTCAAAGACGATGAAGATCTCAAAAAAGGTGAATCCATAGCACCCGAGCTCCTCCATGCCATTCAAAGCTCTCGACTTTTCATTGTTGTCTTCTCAAAGAACTATGCTTCCTCCACCTGGTGCTTGCGTGAACTGGCAGAGATACGTAACTGCGTTCAAACTTCCCCAAGACCTGTTATACCTGTCTTTTATGACGTTGATCCTTCGGTGGTGCGCAAACAGAGTGAATGTTATGAGAATGCATTTGCAGAACACGAAAAGAGATTCAGAGAAGACAAAGCGAAGATGGAGGAAGCTGAGAGATGGAGAGAAGCTCTCAGACAAGTGGCCAATCTCTCTGGTTGGGATATTCGAAATAAGCCACAATATGTACAAATTGAAGAAATTGTTCAAAACGTAATAAATACTTTGGGTCCCAAAATTTGTAGTCTTCCAAAGGATGAACTAGTTGGGATAGAGCATAGACTTGAAGAACTAGTTGGGATAGAGCGTAGACTTCAATCAGTTAATAATGTTGGAGTTGTTGGAATCAGTGGGATGAGTGGCATAGGAAAGACTACTCTTGCTCGAGCTTTATACGAAAGAATATATCATCAATATGATTTTCATTGTTTTATTGATGATGTAAGCAAAATATATCGAGATTCAAGTTCACTAGGTGTACAAAAGCAGTTAATTTCTCAGTCTCTAAATGAGAAAAATCTAGAGATTTCAAATTCTTGTGATGGAACATGTTTGATATGGTCTAGGTTGCACAATGTTAGGGCACTTGTAGTTCTGGACAACGTTGATGAAGTTGAACAACTAAGGATGTTTACAGGGAAAAGAGACACTTTGTTGCGTGAATGCTTAGGTAGAGGAAGCATAATCATCGTAGTTTCTAGGGATGAACATATATTGAGGACGCATGGAGTAAATGACATTTATCAAGTCCAACCGTTGAATGATGAAAATGCCATGCAGCTGTTTTGTAGAAATGCTTTCAAAGTTAATCATATTTTGAGTGATTATGAAAAGTTGGCATGGGATGTACTATCTTATGCTGAGGGCCATCCGTTGGCAATTGAAGTAATTGGGTCATCTTTGTTTGGTCGAAATGTGTCACAATGGGAAAGTGCATTGGCCAGGCTAAAAGAAAAGAAAAGTAAAAATATTATGGATGTTTTGCGTATAAGTTTTGATCAGCTGGATGAAGAAGACAAAGAAATATTTTTGGATATTGCATGTGCCCTATGCCATCATGATGAGGAATATGTGACGGAAGTTCTAAAGTTTCGTGGATTTCATCCTGAATATGGTCTACAAGTTCTGCTTGACAAATCACTAATATCGAAAAGGAGTGGGATTATTGATATGCATCGCTTGTTGAAGGACTTGGGCAGGTATATTGTCAAAGAAGAATCACCTAAGGAACCCCTAAAGAGGAGTAGGTTGTGCAATTACCAAGATTTCTGCAAAGCTATGTCAAACAATCAGACAACTGAAATTCTTGAAGTCGTAGCTGTTTATCTACTACGGAATTCTAAAACTGTGAGGGTAGATGGTTTATCGAAAATTAGACACCTTAAGTATCTTAGAGTTGGGTACGTGAACTGTTCAGGAAGTCTCAGTCATCTTTCAAGTGAACTAGGATATCTTATTTGGCACAATTATCCTTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTACTATTGAGAGGAAGCAGTATTCAACGACTATGGAGTGGTACAAAGGTGCTACCTAATTTGAAGCGTTTGGATCTCTCTTACTCTAGAAAATTAGTTGAGATGCCAGATGTTGCAGAGGCCCTAAATCTTGAAGGGATAATTCTTGAAGAATGCATACAGCTCCGAAAACTCAGTCCATCGATTGGTCTCCTGAGCAAGCTTACTATTTTGAGTTTGAGAAACTGTAAAAACTTAGTAAGTTTACCCAATAGCATATTGGGCCTGAATTCTCTTGAATATTTGGGTGTCTATGGTTGTTCAAAACTGTTTAAAAATGAGTTATTAGATGAAGCAAGGAACACAAAGCATTTGAAGAAGCGTTGTTTAGTTGACGGTCCTATTCATTCCCACTCAAAATCCCATTTAATAAAAAAAATGCTTTTGTGGCCTTTAGGTTTGTTGTATTCCAGAGCACAAAGAGAGTCAGTTAGTTGTTTGTTACCTTCCTCTCCCACTCTCCCTTGTTTGCGTGTACTCGATCTAAGATTCTGCAACTTAGTTAAAATCCCTGATGCCATTGGAAAGTTAAGTTGTTTAGAAAAGTTAAATTTGAAGGGAAACAATTTTGTTACATTGCCTAACCTCAAGGACCTTTTTAGACTGTATTATTTAAACTTAGAGAATTGCAAGCGATTGAAATACTTGCCTGACCTCCCTTCACGAACTCACTTGCCCTTAAATCTTTACTCGTATCCGATACAATATTTTGTATCCTTCCGCGATCGTATAATAGAGGACTATAAAGATATGACGGGATTAATGATGTTCAACTGCCCAGAAATAGTTGAGAGGGAACGGTGCACTAGCATGACTGTTTCATGGATGCTACAAATTCTTCAGGTGTGCATGTTTCTTCCTTACACTTTCCTTCTTTTAATCTCTTTTGGATTTGAAAAAAAACTACTAACGCATAACAAAACTCAGTCGTGGTACAACTCAGAATGTTTCATCCCAAGTATTGGAAGTATTATCCCTGGAAGTGAAATACCAATGTGGTTCAACAATCAGGTTGTGAGCATGGACAATTCAATAATCATAGATGTCTCTCCTTTTGTGCATGACAATAATTGGGTTGGTGTCGTGTGCTGTGTAATATTCAGTGAAAATGTTTCCCGTAATAGTATTTACAACTTAGATCATATGTGGCTATTTTATTACTCTCGTCAAGAGTTCCGCCGTGAACAAGGCATATTTCAGGGCAAACTTGATATACGTAACTTGAGATTGACATTTACATTAGAGGACGTGAAAATACTTTGTATATCAAAGGTAGATAGGTTCCTGGAATTTGCTGATTTTGAAGTGAAAAAATACGCCTATCGATGGGTAAATAAGCAAGATCTGCAGTGA 3243 0.3821 MSSNAIVQYTASSSHAINRYDVFVSFRGEDTRNNFTGFLFQALRRKAIYAFKDDEDLKKGESIAPELLHAIQSSRLFIVVFSKNYASSTWCLRELAEIRNCVQTSPRPVIPVFYDVDPSVVRKQSECYENAFAEHEKRFREDKAKMEEAERWREALRQVANLSGWDIRNKPQYVQIEEIVQNVINTLGPKICSLPKDELVGIEHRLEELVGIERRLQSVNNVGVVGISGMSGIGKTTLARALYERIYHQYDFHCFIDDVSKIYRDSSSLGVQKQLISQSLNEKNLEISNSCDGTCLIWSRLHNVRALVVLDNVDEVEQLRMFTGKRDTLLRECLGRGSIIIVVSRDEHILRTHGVNDIYQVQPLNDENAMQLFCRNAFKVNHILSDYEKLAWDVLSYAEGHPLAIEVIGSSLFGRNVSQWESALARLKEKKSKNIMDVLRISFDQLDEEDKEIFLDIACALCHHDEEYVTEVLKFRGFHPEYGLQVLLDKSLISKRSGIIDMHRLLKDLGRYIVKEESPKEPLKRSRLCNYQDFCKAMSNNQTTEILEVVAVYLLRNSKTVRVDGLSKIRHLKYLRVGYVNCSGSLSHLSSELGYLIWHNYPFECLPQSFQPHKLVELLLRGSSIQRLWSGTKVLPNLKRLDLSYSRKLVEMPDVAEALNLEGIILEECIQLRKLSPSIGLLSKLTILSLRNCKNLVSLPNSILGLNSLEYLGVYGCSKLFKNELLDEARNTKHLKKRCLVDGPIHSHSKSHLIKKMLLWPLGLLYSRAQRESVSCLLPSSPTLPCLRVLDLRFCNLVKIPDAIGKLSCLEKLNLKGNNFVTLPNLKDLFRLYYLNLENCKRLKYLPDLPSRTHLPLNLYSYPIQYFVSFRDRIIEDYKDMTGLMMFNCPEIVERERCTSMTVSWMLQILQVCMFLPYTFLLLISFGFEKKLLTHNKTQSWYNSECFIPSIGSIIPGSEIPMWFNNQVVSMDNSIIIDVSPFVHDNNWVGVVCCVIFSENVSRNSIYNLDHMWLFYYSRQEFRREQGIFQGKLDIRNLRLTFTLEDVKILCISKVDRFLEFADFEVKKYAYRWVNKQDLQ 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00787 1080 Gene3D - 191 356 IPR027417 -
Vian5g00787 1080 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Vian5g00787 1080 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 723 IPR044974 GO:0006952
Vian5g00787 1080 ProSiteProfiles Leucine-rich repeat profile. 809 830 IPR001611 GO:0005515
Vian5g00787 1080 SMART till_3 19 162 IPR000157 GO:0007165
Vian5g00787 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 457 IPR027417 -
Vian5g00787 1080 SUPERFAMILY L domain-like 502 891 - -
Vian5g00787 1080 SMART LRR_typ_2 682 706 IPR003591 -
Vian5g00787 1080 SMART LRR_typ_2 807 832 IPR003591 -
Vian5g00787 1080 SMART LRR_typ_2 635 659 IPR003591 -
Vian5g00787 1080 SMART LRR_typ_2 784 806 IPR003591 -
Vian5g00787 1080 Pfam C-JID domain 955 1078 IPR045344 -
Vian5g00787 1080 Pfam TIR domain 20 199 IPR000157 GO:0007165
Vian5g00787 1080 Pfam NB-ARC domain 212 436 IPR002182 GO:0043531
Vian5g00787 1080 Gene3D - 17 190 IPR035897 -
Vian5g00787 1080 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 165 IPR035897 -
Vian5g00787 1080 Gene3D - 363 447 IPR042197 -
Vian5g00787 1080 PRINTS Disease resistance protein signature 398 412 - -
Vian5g00787 1080 PRINTS Disease resistance protein signature 633 649 - -
Vian5g00787 1080 PRINTS Disease resistance protein signature 224 239 - -
Vian5g00787 1080 PRINTS Disease resistance protein signature 300 314 - -
Vian5g00787 1080 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 188 - -
Vian5g00787 1080 Gene3D Ribonuclease Inhibitor 533 743 IPR032675 -
Vian5g00787 1080 Gene3D Ribonuclease Inhibitor 765 885 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00787 Vian-Chr5 27622829 27626701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00787 198 850 WRKY Transcription Factor Family AT5G45050 32.064 1.69e-73 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00787 - - vum:124845879 1542.32