Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00786 ATGTGTTCTAAGGCCATCGTCCAATACACCGCTTCTTCATCTCATCCAATTAACAGATACGATGTATTTGTGAGCTTCCGCGGTAAAGACACACGCAACAACTTCACTGGTTTTCTCTTTGAAGCTCTCCGTAGAAAAGGCATCGATGCCTTCAAAGACGATGAAGATCTCAAAAAAGGTGAATCCATAGCACCCGAGCTCCTCCATGCCATTCAAAGCTCTCGACTTTTCATTGTTGTCTTCTCAAAGAACTATGCTTCCTCCACCTGGTGCTTGCGTGAACTGGCAGAGATACGTAACTGCGTTCAAACTTCCCCAAGACCTGTTATACCTGTCTTTTATGACGTTGATCCTTCGGTGGTGCGCAAACAGAGTGAATGTTATGAGAATGCATTTGCAGAACACGAAAAGAGATTCAGAGAAGACAAAGCGAAGATGGAGGAAGCTGAGAGATGGAGAGAAGCTCTCAGACAAGTGGCCAATCTCTCTGGTTGGGATATTCGAAATAAGCCACAATGTGTAGAAATTGAAAAAATTGTTCAAACCGTAACAAATATTTTGGGTCCCAAAATTTGTAGTCTTCCAAAGGACGAACTAGTTGGGATAGAGCATAGACTTGAAAAATTAGCAAATATTGTATGTACTGAATCAGTTAATAATGTTGGAGTTGTTGGAATCAGTGGGATGGGTGGCATAGGAAAGACTACTCTTGCTCGAGCTTTATACGAAAGAATATATCATCAATATGATTTTCATTGTTTTATTGATGATGTAAGCAAAATATATCGAGATTCAAGTTCACTAGGTCTACAAAAGCAGTTAATTTCTCAATCTCTAAATGAGAAAAATCTAGAGATTTCAAATTCTTTTGAGGGAACATGTTTGATTTGGTCTAGGCTGCGCAATGTTAGGGCACTTGTAGTTCTGGACAACGTTGATGAAGTTGAACAACTAAGGATGTTTACAGGGAAGAGAGACACTTTGTTGCGTGAATGCTTAGGTGGAGGGAGCAGAATCATCTTAGTTTCTAGGGATGAACATATATTGAGGACGCATGGAGTAGATGACATTTATCAAGTCCAGCCATTGAATCGCGAAAATGCTATGCAGCTGTTTTGTAGAAATGCTTTTAAAGTTAATCATATTTTGAGTGATTATGAAAAGTTGGCACGAGGTATACTATCTCATGCTCAGGACCATCCCTTGGCAATTGAAGTAATTGGGTCGTCTTTGTTTGGTCGAAATGTGTCACAATGGGAAAGTGCATTGGCCAGGCTAAAAGAAAAAAAAAGTAAAAATATTATGGATGTTTTGCGTCTAAGTTTTGATCAGCTGGATGAAGATCAGAAAGAAACATTTTTGGATATTGCAAGTGTCCTATGCAATCATCATGAGAAATATGTGAAGGAAGTTCTAAACTTTCGTGGATTTCATGCTGAATATAGTCTACAAGTTCTGCTCGACAAATCACTAATAGTAAGTCGTGATGGGTTTATTCATATGCATTGCTTCTTGAAGGACTTGGCAGAGTATATTGTCAAAGAAGAATCACCTAAGGAACCCCTAAAGAGGAGTAGGTTGTGGGATTACCAAGATTTCCGCAAAGCTATGTCGAACAATGAGACAACTGAAATTCTTGAAGTCGTAGCTGTTCATGCACTATTGAATTCTAAAACTGTGAGGGTAGATGGTTTATCGAAAATTAGACACCTTAAGTATCTTAGACTTAAGTACGTGAACTGTTCAGGAAGGTTCAGTCATCTTTCAAGTGAACTAGGATATCTTGATTGGAACAATTATCCTTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTACTATTGAGAGGAAGCAGTATTCAACGACTATGGAGTGGTACAAAGGTGCTACCTAATTTGAAGCATTTGGATCTCTCTTACTCAGAAAAATTAGTTGAGATGCCAGATGTTGCAGAGGCCCTAAATCTTGAAGGCATAGAACTTGAAGGATGCATACAGCTCCGAAAACTCAGTCCATCGATTGGTCTTCTGAGCAAGCTTACTATTTTGAATTTGAAAAACTGTGAAAACTTAGTAAGCTTACCCAATAGCATATTGGGCCTGAATTCTCTTGAATATCTGAGTGTCTATGGTTGTTCAAATCTGTTTAATAATGAGTTATTTGATGAAGCAAGTAACACAGCATTTGAAGAAGCTTTGTTCAGTTGA 2220 0.3865 MCSKAIVQYTASSSHPINRYDVFVSFRGKDTRNNFTGFLFEALRRKGIDAFKDDEDLKKGESIAPELLHAIQSSRLFIVVFSKNYASSTWCLRELAEIRNCVQTSPRPVIPVFYDVDPSVVRKQSECYENAFAEHEKRFREDKAKMEEAERWREALRQVANLSGWDIRNKPQCVEIEKIVQTVTNILGPKICSLPKDELVGIEHRLEKLANIVCTESVNNVGVVGISGMGGIGKTTLARALYERIYHQYDFHCFIDDVSKIYRDSSSLGLQKQLISQSLNEKNLEISNSFEGTCLIWSRLRNVRALVVLDNVDEVEQLRMFTGKRDTLLRECLGGGSRIILVSRDEHILRTHGVDDIYQVQPLNRENAMQLFCRNAFKVNHILSDYEKLARGILSHAQDHPLAIEVIGSSLFGRNVSQWESALARLKEKKSKNIMDVLRLSFDQLDEDQKETFLDIASVLCNHHEKYVKEVLNFRGFHAEYSLQVLLDKSLIVSRDGFIHMHCFLKDLAEYIVKEESPKEPLKRSRLWDYQDFRKAMSNNETTEILEVVAVHALLNSKTVRVDGLSKIRHLKYLRLKYVNCSGRFSHLSSELGYLDWNNYPFECLPQSFQPHKLVELLLRGSSIQRLWSGTKVLPNLKHLDLSYSEKLVEMPDVAEALNLEGIELEGCIQLRKLSPSIGLLSKLTILNLKNCENLVSLPNSILGLNSLEYLSVYGCSNLFNNELFDEASNTAFEEALFS 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00786 739 Gene3D - 362 446 IPR042197 -
Vian5g00786 739 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 719 IPR044974 GO:0006952
Vian5g00786 739 Gene3D - 190 355 IPR027417 -
Vian5g00786 739 Pfam NB-ARC domain 206 435 IPR002182 GO:0043531
Vian5g00786 739 Gene3D Ribonuclease Inhibitor 537 731 IPR032675 -
Vian5g00786 739 SMART till_3 19 162 IPR000157 GO:0007165
Vian5g00786 739 Pfam TIR domain 20 185 IPR000157 GO:0007165
Vian5g00786 739 SUPERFAMILY "Winged helix" DNA-binding domain 433 535 IPR036390 -
Vian5g00786 739 Gene3D - 17 189 IPR035897 -
Vian5g00786 739 SUPERFAMILY L domain-like 562 717 - -
Vian5g00786 739 PRINTS Disease resistance protein signature 299 313 - -
Vian5g00786 739 PRINTS Disease resistance protein signature 397 411 - -
Vian5g00786 739 PRINTS Disease resistance protein signature 632 648 - -
Vian5g00786 739 PRINTS Disease resistance protein signature 223 238 - -
Vian5g00786 739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 456 IPR027417 -
Vian5g00786 739 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Vian5g00786 739 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 188 - -
Vian5g00786 739 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00786 Vian-Chr5 27604710 27607771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00786 20 721 WRKY Transcription Factor Family AT4G12020 29.028 1.43e-74 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00786 - - vra:106780741 1174.84