Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00778 ATGGCATTAACTTCCTCAACTCTGGCATCCTTGACATCATTCCTTTGCCTGTGTACGTTTTGTGTTAATGCAGTCATTCACAAGGAATTTTTGCAAATAGGAGAATCAATGGGAACCTTAGACTCCGTTGTTTCTTATACCGGGAAGTTCGAATTGTGCTTTTTCACCAGAATCAGAGATAACTCAACCAAGTACTACGTTGGTATACGGTATAACAGGGTCCCAAACGACAAGAACAAGATTGTCTGGGTTGCTAACCGAGACTACGCATTTCAAACACCATCAGCAGTTCTTACCTTTAAAGATGGAAATTTGGTGATCATAGATGGAAAACTTACATACAATGTCAGCAATGTTTCAAACAATATCAGTGTCTATGCCATGCTCTTGGATTCAGGAAACTTGATACTGCTGAAAACCTCAAGTAAACAGATTTTGTGGCAGAGTTTTGATTATCCTACGGACACCCTTTTACCCATAATGAAACTAGGACATGACGAAGGAAACACTTGGTCATTGCGATCATGGAGAAGTGCAGATGACCCTGACCAAGGAGCTTTTTCCCTCGAATATGATTTGGGCAGGGTCAGCCTAATCATCAACAATGGTTCTAATGCTTTCTGGATTGACAACCACTACAACGAAACTATTGGCAATTTTACTAGCCGAAGTGGTGGATATCAGCACAACCTCAACGATACTCGTTTCAATGTCGGCTACTATTTCACTTTGCCAGTTGGTAATGACTCTAGGCTGGTACTAGAAGTGTCTGGTGAGCTCATCCAGGAGTATTGGTCTGATAAAGAACACCAATGGATTTCTATTCAGTCATCCAAGTGTGCTAACAATTCGTGTGGAGCCTTTTCCATCTGTAACCCGAAAGCTCGTGACCCTTGTGACTGTCTTCAAGGTTTCAGGCCCTCTGATGCTGATTCTTGGTATAATGGGAACAAATCTGCTGGCTGTGTAAGGAAAAAAGACTTGTCGTACTGCAGTAACAGTGTTAAATCCAACGATAAATTCAAGCAACTTTATTATGTCAAATCACCAACTTTGGACAGTCTCACGAAAATCAATACAACAACAACAAGAGAGTGTGAAAGTACTTGTTCTAGAAATTGTTCTTGCGTTGCTTACGCTTACTATGTGAACGGATATTGCCAGTTGTGGCTTGGTTCGGTATTGAATCTAAAGAACGTCTCAACAGATGTGGCCAATTCTGATGATAGCAAACCAATTTTTTACCTAAGACTTGCTGCCGCGGAAGTCGATACTTCGGATTCGAACACAACAAGAGAAAAAGAATCACGACAAACTTCTGTGAGCAAGATCCTACTTCTGATTGTTATGTTGATCTCCTTTGTAGTTTTTCTTATATTGGGCCTTTTAGTTTACTGGATTAGAAAGAAGAGGAGAAAAGGGGAAGATTTGCTCCATTTTGATATAAGCATGAGCATGAAAGTTGAAGATTCTGAGCTTACTGAAGCAGATAGGAGTGCCAAAGTGAAGAAGGAAGTGAAATTGCCTTTATTCAGTTTCGAGAGTGTTGCAGCTGCAACTAATAATTTCTCAGATGCAAATAAACTTGGTGAGGGGGGCTTTGGACCCGTCTACAAGGGTACATTATTTAATGGGGATGAGGTTGCTGTGAAAAGACTGTCACGGAGATCTGGTCAAGGATGGGAAGAGTTGAGAAATGAAGCTTTGTTGATTGCAAAACTCCAACACAACAATCTTGTTAGACTTCTGGGTTGCTGCATTGATCGAAATGAAAAGATGCTGATTTATGAATTTATGCCTAATAAAAGCTTGGATCTTTTCCTTTTTGATGCAACAAAGAAACAGATGCTGGATTGGGGAACAAGACTCAGAATAATTGATGGGATTGTCCAAGGAATTCTTTATCTTCATCAGTATTCCAGGTTCAGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTGGACAGCCATATGAATCCCAAAATATCAGATTTTGGATTGGCAAAAATATTTGGTGATAATGAGCTTCAAGCAAATACAAACCGAATAGTTGGAACGTATGGTTATATGGCTCCTGAATATGCTGCAGAAGGGCTCTTCTCAGTAAAATCGGACGTGTTTAGTTTTGGGGTCCTTTTGCTGGAGATTCTAAGTGGCAAGAAGAATACTGGCTTTTATCAAACGAATTCCTTCAATCTTCTTGGATATGCTTGGGATCTTTGGACAAGAAATTCAGGACTGGATCTAATGGACAGTGCATTAGATGACAGTGATACTTTAAGTAATAACAGTCTGCATACTGTGCCAAGATATGTGAACATAGGACTTCTTTGCGTTCAAGAAAGTCCAAAAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGAAATGACACTGTGCTCCTTCCTTCTCCTAAACCACCTGCATTTCTAAAGGTAAGAGGTGAGTATAGTTCAACATTGCCCTCAACCACCCCAGAAAGATTTTCAGTTAATGTTATCACAAATACAACTATGGAAGCAAGATGA 2538 0.3995 MALTSSTLASLTSFLCLCTFCVNAVIHKEFLQIGESMGTLDSVVSYTGKFELCFFTRIRDNSTKYYVGIRYNRVPNDKNKIVWVANRDYAFQTPSAVLTFKDGNLVIIDGKLTYNVSNVSNNISVYAMLLDSGNLILLKTSSKQILWQSFDYPTDTLLPIMKLGHDEGNTWSLRSWRSADDPDQGAFSLEYDLGRVSLIINNGSNAFWIDNHYNETIGNFTSRSGGYQHNLNDTRFNVGYYFTLPVGNDSRLVLEVSGELIQEYWSDKEHQWISIQSSKCANNSCGAFSICNPKARDPCDCLQGFRPSDADSWYNGNKSAGCVRKKDLSYCSNSVKSNDKFKQLYYVKSPTLDSLTKINTTTTRECESTCSRNCSCVAYAYYVNGYCQLWLGSVLNLKNVSTDVANSDDSKPIFYLRLAAAEVDTSDSNTTREKESRQTSVSKILLLIVMLISFVVFLILGLLVYWIRKKRRKGEDLLHFDISMSMKVEDSELTEADRSAKVKKEVKLPLFSFESVAAATNNFSDANKLGEGGFGPVYKGTLFNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEFMPNKSLDLFLFDATKKQMLDWGTRLRIIDGIVQGILYLHQYSRFRIIHRDLKASNILLDSHMNPKISDFGLAKIFGDNELQANTNRIVGTYGYMAPEYAAEGLFSVKSDVFSFGVLLLEILSGKKNTGFYQTNSFNLLGYAWDLWTRNSGLDLMDSALDDSDTLSNNSLHTVPRYVNIGLLCVQESPKDRPTMSDVVSMIGNDTVLLPSPKPPAFLKVRGEYSSTLPSTTPERFSVNVITNTTMEAR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00778 845 CDD B_lectin 42 153 IPR001480 -
Vian5g00778 845 Gene3D Transferase(Phosphotransferase) domain 1 599 803 - -
Vian5g00778 845 CDD STKc_IRAK 529 798 - -
Vian5g00778 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 120 819 - -
Vian5g00778 845 CDD PAN_AP_plant 331 419 - -
Vian5g00778 845 SUPERFAMILY Protein kinase-like (PK-like) 509 832 IPR011009 -
Vian5g00778 845 Pfam Protein tyrosine and serine/threonine kinase 527 797 IPR001245 GO:0004672|GO:0006468
Vian5g00778 845 Gene3D Phosphorylase Kinase; domain 1 497 598 - -
Vian5g00778 845 ProSiteProfiles Protein kinase domain profile. 523 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00778 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 182 IPR036426 -
Vian5g00778 845 Gene3D - 24 150 IPR036426 -
Vian5g00778 845 Pfam D-mannose binding lectin 81 177 IPR001480 -
Vian5g00778 845 PIRSF SRK 1 845 IPR024171 GO:0004674
Vian5g00778 845 FunFam Uncharacterized protein 498 598 - -
Vian5g00778 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Vian5g00778 845 ProSiteProfiles PAN/Apple domain profile. 331 419 IPR003609 -
Vian5g00778 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 806 - -
Vian5g00778 845 Pfam PAN-like domain 335 396 IPR003609 -
Vian5g00778 845 SMART serkin_6 523 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00778 845 Pfam S-locus glycoprotein domain 233 308 IPR000858 GO:0048544
Vian5g00778 845 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Vian5g00778 845 SMART blect_4 34 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00778 Vian-Chr5 27383461 27386864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00778 427 814 Receptor kinase-like Gene Family AT4G23190 49.364 4.06e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00778 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00778 - - pvu:PHAVU_011G149500g 1149.04