Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00772 ATGTCACTGCAGGCTCTGAAGGAGACTCTGCAACCTTGTTCAACCCAAAAACCCTCTTCCTCTTCTGCAATTACCCAAACACAGCGCAATCCAATTCTTCGTGACTACGATTCCCTCTTCCCAATCCACAGAAAACCTCCAAAATCGTCTCTTTCGGACCAGCTTCGCCGCCTTAACGACTCACTATCCCCATTACACTCCAAAACCCTACAACAAGAAGAAAAAAAAGAGGAACTACTAGAAGAAGAAGAAGAAGAACCTGAGATAGAGAGACCCAAATTCACTTCAGTTAAATTGCCACAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCGGTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGAGGGTGTGAGGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCATACTTGGAGATGACATGGGTCTTGGGAAGACAATTCAAGCAATAGCATTCCTTGCTGCTGTCTTTGGTAAAGAAAATTCTACCCTAAATGAAAACCAGCTAGAGAAAAGAGAACCTGCATTAATAATATGCCCAACATCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATTTGATATTTGATAAATTGGAAGCAAATGGAGTAGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTTTGTTGTCAGATGTCAAATGGAATGTCATGATTGTCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTACAAATTAAAACCCTTAGACGGTATGGTCTCACTGGGACTATAATGCAAAATAAGATAATGGAACTGTTCAATCTCTTCAACTGGGTTTCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGACTTCTATGATGAACCCCTAAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTCGTGGAAGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGTAAGGAAGATAACATTGTATTTTGTGCAATGAGTGATGTGCAAAAACGTATTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACTTGCCATGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACTTGCATAGAGATAACCCAGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCGTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTCATCAAACCAAACCCCAAAGATGACCCTGAGAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATCGATTTAGTGGGTGGGAAAACACAAAATGAAAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAGAAGCTATTGTTCTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTTATTCGAAAAGGCTACTGTTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGCCAATCCCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGACCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTATTCACGTCAGGTGTATAAGCAGCAGCTCTCGAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAAGCTGTTTACCAGTGAGATCATTGAATTGCATAAAGAACATGGATATGAATCGGAACAACTGGAAGAAGTAAATCTGTCAGAACAAAGAGGTTCATCGGTATCAGAGTCAGAAACCAGATTATGTCATAAGTCTGCTGGGGCCGCAACAAGCAAACCAGATCTTGAAGGCCTTGGCATAGTATATACTCATCGCAATGAAGACATTGTCAACTTTGGACCTGGGATTCAAGGGAAAATAAATGCCAACCCATCAAATGATAGCTTAGTCAAGCCAAGCACCTCTTTGGACCATCAAAGAAAAAGACCAGAAAAAAGGAAAGTTCCTTTGATTGATGATAGGAAGAGAACCCAATATAAGCTCCTTGCTCGGTCTATGGGCATGGAAGAGCTTGCTTTTAGCAAATGGTTATTATCAGCGACTCCACTTGAGAGAGAAAAAGTCCTTCTTGACTACAAGAAGAAAAAGAAGATGCCTAATGGTTGA 2595 0.415 MSLQALKETLQPCSTQKPSSSSAITQTQRNPILRDYDSLFPIHRKPPKSSLSDQLRRLNDSLSPLHSKTLQQEEKKEELLEEEEEEPEIERPKFTSVKLPQFQFDHTGPFEPLLLSSHGEFPVVQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFGKENSTLNENQLEKREPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSLLSDVKWNVMIVDEAHRLKNEKSKLYKACLQIKTLRRYGLTGTIMQNKIMELFNLFNWVSPGSLGTREHFRDFYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPEKQSKDAEFAAAVFGPDIDLVGGKTQNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKEHGYESEQLEEVNLSEQRGSSVSESETRLCHKSAGAATSKPDLEGLGIVYTHRNEDIVNFGPGIQGKINANPSNDSLVKPSTSLDHQRKRPEKRKVPLIDDRKRTQYKLLARSMGMEELAFSKWLLSATPLEREKVLLDYKKKKKMPNG 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00772 864 Gene3D - 114 365 IPR038718 -
Vian5g00772 864 MobiDBLite consensus disorder prediction 1 91 - -
Vian5g00772 864 CDD SF2_C_SNF 516 645 - -
Vian5g00772 864 SMART ultradead3 130 324 IPR014001 -
Vian5g00772 864 FunFam Switch 2 116 365 - -
Vian5g00772 864 SMART helicmild6 551 634 IPR001650 -
Vian5g00772 864 Gene3D - 378 733 IPR027417 -
Vian5g00772 864 Pfam SNF2-related domain 150 406 IPR000330 GO:0005524|GO:0140658
Vian5g00772 864 Pfam Helicase conserved C-terminal domain 522 634 IPR001650 -
Vian5g00772 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 366 IPR027417 -
Vian5g00772 864 Coils Coil 65 86 - -
Vian5g00772 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 678 IPR001650 -
Vian5g00772 864 MobiDBLite consensus disorder prediction 1 33 - -
Vian5g00772 864 MobiDBLite consensus disorder prediction 784 810 - -
Vian5g00772 864 MobiDBLite consensus disorder prediction 52 68 - -
Vian5g00772 864 PANTHER SNF2/RAD54 FAMILY MEMBER 26 808 - -
Vian5g00772 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 689 IPR027417 -
Vian5g00772 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 316 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00772 Vian-Chr5 27281770 27287761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00772 154 664 RAD5 or RAD16-like Gene Family AT1G02670 26.212 2.20e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian5g00772 SNF2_N 1.7e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00772 K20098 - gmx:100781003 1519.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00772 5 27281770 27287761 Vian5g00772 5 27281770 27287761 ECH