Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00769 ATGGTGTGTTTGGGGTTTGACATGGTTGAGGTTGACTTTCAAAGGTTGGAACTTGAGAGGAGGGAAGTGAGGATTTTGTTGAGAATTTCATGTGGGTGGTTGGTTTTTTTGTTGTTTCTGAGTCCTGTGGCGGGTTTGAGACCCTTAAGGGATAAAACCAATTCCTGGGGTGATGAGTGGGTTTTTACGAGAAAAGACGAAAGTGACTTAGGTCCATTTTCACAATGGAACATAACTGGAACTTACAGAGGGACTTGGAAGTTTTTAGATACAACAAATGGTTCTACAAGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTGTGCCAACAAAGATAACTGGTGTACATTATGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTATAGGCAGCTTCGAATGGTAGCCAACAGTGGTAAAGATGGGGGACTAAATCCGGAGGGAGACTATATTTTATCAAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCACGACAAAAGATGTGGAGAAGAAAACATTCTCCATTGCACGGAATGGAGAAACATTGCAATGTAGAAATAGCTGCACAGGTTTCACGCCTGTCATTGTCAAAACATGAAGGGGAGCGTGATTCTTTTCAGCTAGTAGGGTTAGTGGAGAGTCCGTCTGTGGACGATGATGGGGACTGCTTCTCGCCTTTACAGTTAAATGCAACTTCTATTAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTATCTCATTTTTGCAAGTTCTTCTTTTAATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATATTAACGATTGGTCAGCAAGCTATAGTAGATGCTTATCTTTGCCTTATACATTTGACTGCCGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCGACTGCTGCATTTTTCAAGTTTGTGGTGTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAAGCAAGTAGGCCTTTGAGCAACGGTGAAGGTTGGGAAGCAATGAGGCGTGAACTATCAGTTTTATACAGCCGATTCTATGGAATCCTACTGGGAGGCATACTGCTCATGTATGAATTCCACAATCATTTGAGACTTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTTGTTCGTGACTCACGCAAGCCATTGCATCCTCATTATATATTAGGCATAACTATTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGTCCTGACAACTTCTTGCGTATAGAACCAGATCAGAGCTGGTGTGTTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTGCTTCAGCACTATTTTGGGTCTTTGTGGTTCATTCCTCGTCAGGTGACCCCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACATGCCGACGCCCTCTTCCACCTGCCTGA 1611 0.4066 MVCLGFDMVEVDFQRLELERREVRILLRISCGWLVFLLFLSPVAGLRPLRDKTNSWGDEWVFTRKDESDLGPFSQWNITGTYRGTWKFLDTTNGSTRFPDIRKINGNSVIELVSVPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKDGGLNPEGDYILSNPYHLLGVFSSQVFQESSRQKMWRRKHSPLHGMEKHCNVEIAAQVSRLSLSKHEGERDSFQLVGLVESPSVDDDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILTIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHNHLRLILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITITRLAIPLYIFGCPDNFLRIEPDQSWCVCLAIFVGLQAAILLLQHYFGSLWFIPRQVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00769 536 ProSiteProfiles Zinc finger RING-type profile. 475 530 IPR001841 -
Vian5g00769 536 Pfam Ring finger domain 504 530 IPR001841 -
Vian5g00769 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 533 IPR013083 -
Vian5g00769 536 PANTHER RING ZINC FINGER PROTEIN 135 535 - -
Vian5g00769 536 SUPERFAMILY RING/U-box 502 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00769 Vian-Chr5 27243292 27259018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00769 501 533 C3H Transcription Factor Family AT4G12190 48.571 3.31e-06 43.1