Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00767 ATGGCTGATGGACTGGAACATCCATCAGTTGTTCAGAAGCTAGCTGGACAGTCTTACCTTGTCTCCAGGCTCAGCCCCAACATTCACTCCAGGAATTATTCTGCAACTGGTTCTTACCTCAATGGAGGACTGCACACTTCTGGGTTGGCTGCCTTGTCATCTGTATCTCCAATTACTGCACATGCTCCAGCAGAGAAAGGACCAGGTGCTTTTATGGTGGATTTTCTGATGGGCGGAGTATCTGCTGCTGTATCAAAGACAGCTGCTGCTCCAATTGAGAGAGTTAAATTGCTCATTCAAAATCAGGATGAAATGATCAAAAGTGGTCGGTTATCTGAACCATACAAGGGAATTGGTGATTGTTTTGCTCGAACCATGAAGGATGAGGGTGTAATTGCTCTTTGGAGAGGCAATACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTCTGAACTTTGCTTTTAAGGATTACTTCAAGAGGCTATTTAACTTTAAAAAGGACAAAGATGGCTACTGGAAATGGTTTGCTGGAAATTTGGCATCTGGTGGGGCTGCTGGGGCTTCTTCTCTCTTATTTGTCTATTCTTTGGATTATGCCCGAACTCGTTTGGCTAACGATTCAAAGGCTGCAAAGAAGGGTGGTGAGAGGCAGTTTAATGGTCTGATTGATGTATACAGGAAAACCATTAAGTCTGATGGTATTGCTGGCCTTTACCGTGGTTTCAACATTTCATGTGTTGGAATTATAGTGTACCGTGGTCTTTACTTTGGAATGTATGATTCTCTGAAACCAGTTGTTTTGGTTGGTGGGTTGCAGGATAGTTTCTTTGCTAGTTTCCTTTTGGGATGGGGAATCACAATTGGTGCTGGTTTGGCTTCCTATCCCATTGACACTGTGCGTAGAAGGATGATGATGACTTCTGGAGAAGCTGTGAAGTATAATAGCTCTTTGCATGCATTTCAAACAATCGTAGCAAAAGAAGGTACCAAGTCACTCTTCAAAGGCGCTGGTGCAAACATATTGCGTGCTGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGATAAGTTGCAGCTTATTATGTTCGGAAAGAAATACGGGTCTGGAACAACACAAGTTCAAGAGCGACACGAGTCAGATGTGGATCAATATGGTTCTCATAGAGCACCCTTAAGAGCATGGATGAGGACTTGGCAAAACTATCAGATTCTGAGGATCCTAAGAGGCATTGGTTGTAGCCTTCAACGAGTGAAGTATTATGGCAAGGTTACTCCACGTGAATTGACCATGTCGGGCAGAAAAGAAACGGTTCTAGACCTTGCGAAGTTCGTAGACAAAGGCGTTCAAGTTAAGCTTACTGGTGGACGACAAGTTACAGGGACTCTAAAAGGGTATGATCAGTTACTTAACCTCGTCCTAGATGAAGCAGTGGAGTTTTTAAGAGATCCTGATGATCCTCTCAAAACTACCGATCAGACCAGACAACTTGGCCTAATTGTTTGTAGAGGAACTGCTGTCATGCTTGTGTCCCCAACTGATGGTACAGATGAAATCGCCAACCCCTTTATACAGCCAGATGGGGCTTAA 1587 0.4405 MADGLEHPSVVQKLAGQSYLVSRLSPNIHSRNYSATGSYLNGGLHTSGLAALSSVSPITAHAPAEKGPGAFMVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFARTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLIDVYRKTIKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGLQDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLHAFQTIVAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLIMFGKKYGSGTTQVQERHESDVDQYGSHRAPLRAWMRTWQNYQILRILRGIGCSLQRVKYYGKVTPRELTMSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00767 528 PRINTS Mitochondrial carrier protein signature 239 257 IPR002067 GO:0055085
Vian5g00767 528 PRINTS Mitochondrial carrier protein signature 283 305 IPR002067 GO:0055085
Vian5g00767 528 PRINTS Mitochondrial carrier protein signature 74 87 IPR002067 GO:0055085
Vian5g00767 528 PRINTS Mitochondrial carrier protein signature 137 157 IPR002067 GO:0055085
Vian5g00767 528 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Vian5g00767 528 PRINTS Mitochondrial carrier protein signature 87 101 IPR002067 GO:0055085
Vian5g00767 528 CDD LSm7 434 522 IPR017132 GO:0000398|GO:0000956
Vian5g00767 528 Gene3D - 422 521 - -
Vian5g00767 528 FunFam sm-like protein LSM7 430 521 - -
Vian5g00767 528 Pfam Mitochondrial carrier protein 275 361 IPR018108 -
Vian5g00767 528 Pfam Mitochondrial carrier protein 173 266 IPR018108 -
Vian5g00767 528 Pfam Mitochondrial carrier protein 71 166 IPR018108 -
Vian5g00767 528 SUPERFAMILY Mitochondrial carrier 71 356 IPR023395 -
Vian5g00767 528 ProSiteProfiles Solute carrier (Solcar) repeat profile. 274 360 IPR018108 -
Vian5g00767 528 ProSiteProfiles Sm domain profile. 435 515 IPR047575 GO:0003723
Vian5g00767 528 Pfam LSM domain 439 511 IPR001163 -
Vian5g00767 528 FunFam ADP,ATP carrier protein, mitochondrial 72 367 - -
Vian5g00767 528 PRINTS Adenine nucleotide translocator signature 148 160 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vian5g00767 528 PRINTS Adenine nucleotide translocator signature 174 187 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vian5g00767 528 PRINTS Adenine nucleotide translocator signature 115 136 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vian5g00767 528 PRINTS Adenine nucleotide translocator signature 71 83 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vian5g00767 528 PRINTS Adenine nucleotide translocator signature 279 295 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vian5g00767 528 SUPERFAMILY Sm-like ribonucleoproteins 440 514 IPR010920 -
Vian5g00767 528 Gene3D Mitochondrial carrier domain 72 367 IPR023395 -
Vian5g00767 528 SMART Sm3 438 511 IPR001163 -
Vian5g00767 528 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 68 369 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vian5g00767 528 ProSiteProfiles Solute carrier (Solcar) repeat profile. 69 162 IPR018108 -
Vian5g00767 528 ProSiteProfiles Solute carrier (Solcar) repeat profile. 174 266 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00767 Vian-Chr5 27217171 27229863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00767 3 362 Antiporters AT4G28390 81.301 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00767 K05863 - gmx:100818408 674.085