Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00762 ATGCCCGCGCAGAAGCGTTCCTTCCCCGATTCTCCTCACGATCACCACCGTCACACCAAACATCACCACCAAGAAAAAACCGAAGAAGAAGATGCACAACAACGAGAACAGGATAATTATGAATCAAACGGCTCAGATTCTCACCGCCCTCCGTCTTCTCCCTCCGAAGACAATTCCGAATTTGTTTTTGTAGAGCTTCTCGAAATACGTAAAGAAGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAGACACGAACAGTTATGGAATGCTTGCACCGGTTTTGCAGAGAATGCATTGACAAGTCGATGCGAATGGGGAACAATGAATGCCCGGCTTGTCGGACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCTCTGATTGCAGCTTTATATCCAGACATTGAGAAGTACGAGGAAGAGGAGCTTGAGTTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCAGAAGCACTGGTTAAGAGACGCAGAGATACACCAGGTTCATTTGTAACAAGAGCACAGCGCAATCAACGAAATGTTCTTTCTAGGAGACAAAACCAAGTAATGGATAATCAAGGATCTGAGGATAATGAGGATGAAAATGATAACAATGAAAAGGACTCATCTTCCACGGATGAGCGATGTACAGAAATTAGGCAGAGAAGGCGAAAGAGGCGGACCCGAGTTCGCCCTTCTCAGCCATCATCATCGACAGCAAGTCCTGACAGAGGATGCATAGAAAGTGATGTGGACATAAGAGAGAATCGAGGAATTTCTTCTAGACCGTTGTCAAAACCTCAAAAGCTAACATGGGGGAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAGTGGCAATGGTATCAATAGCAAAAGTGCCCGCAGTAGCCGCTTGGCGAAGTTAGTTGATTATCTCCGTAATTTGAATGAAAACAACGATGAGTTAGATGTTCATCTCATTCTTTTCTCTCTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGACCAACTTTGTCAGTGAAGCACCTTTGTGAGTATGTTGCTGGCCAGACATCTTTGCCAATTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTGTGAAAAGCCATTTGACGAGATTTCATCCTTTGATGAGCAAACGGCACTGATAATAGATCCTAGCAAAGATGAACTGGAAACTCTGCAAGGGCATGAATCTTTGACAGAACTTAAATCCAAATGCATATCTCAAAGGGCGCATATGATTCTGGCATACAGGCGGAAGGAGTGA 1362 0.4449 MPAQKRSFPDSPHDHHRHTKHHHQEKTEEEDAQQREQDNYESNGSDSHRPPSSPSEDNSEFVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPGSFVTRAQRNQRNVLSRRQNQVMDNQGSEDNEDENDNNEKDSSSTDERCTEIRQRRRKRRTRVRPSQPSSSTASPDRGCIESDVDIRENRGISSRPLSKPQKLTWGRGGFRSHTRHGSGSGNGINSKSARSSRLAKLVDYLRNLNENNDELDVHLILFSLDKQSTPSLQQPHLCCRPTLSVKHLCEYVAGQTSLPIEEVEILAVKGCCSTVCEKPFDEISSFDEQTALIIDPSKDELETLQGHESLTELKSKCISQRAHMILAYRRKE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00762 453 ProSitePatterns Zinc finger RING-type signature. 91 100 IPR017907 -
Vian5g00762 453 SMART ring_2 75 114 IPR001841 -
Vian5g00762 453 Pfam Zinc finger, C3HC4 type (RING finger) 74 114 - -
Vian5g00762 453 SUPERFAMILY RING/U-box 64 146 - -
Vian5g00762 453 PANTHER OS11G0578200 PROTEIN 3 452 IPR044592 -
Vian5g00762 453 MobiDBLite consensus disorder prediction 23 43 - -
Vian5g00762 453 Coils Coil 144 164 - -
Vian5g00762 453 MobiDBLite consensus disorder prediction 172 313 - -
Vian5g00762 453 MobiDBLite consensus disorder prediction 188 211 - -
Vian5g00762 453 MobiDBLite consensus disorder prediction 1 58 - -
Vian5g00762 453 Coils Coil 23 43 - -
Vian5g00762 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 145 IPR013083 -
Vian5g00762 453 ProSiteProfiles Zinc finger RING-type profile. 75 115 IPR001841 -
Vian5g00762 453 MobiDBLite consensus disorder prediction 44 58 - -
Vian5g00762 453 CDD RING-HC_RING1-like 72 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00762 Vian-Chr5 27143105 27148671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00762 68 138 C3H Transcription Factor Family AT3G23060 35.135 6.04e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00762 K10695 - gmx:100801738 692.96