Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00759 ATGAGCACCATTTGTGCAGAGCACAAGTTCCAACTTCAACCCTCTCACCAGCTTCTCTCTCTCAAAAAATCCCTCAGAGACCTTGACATCCCGCCAAGGAAGCTTCTCACGCGCCGCTCCGCCGCCGACATCTTTTCCGACGACATCCTCCTGCACAAGTACCTCGCGCACACCAAATCCATGGAATCCGATGACTCTGATGACGTCGGAGACCCCTATGCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGCTGCACTCGTAGCCGGAGCCATGACTGGACAGACTGCCCTTTTGCACACCCCGGCGAGAAGGCCCGCCGCCGCGACCCTCGCCGGTTTCATTACTCCGGGACCGTTTGTCCGGAGTATCGCCGCGGGCAGTGCAGCAGCGGCGATGCATGTGAGTTCTCTCATGGGGTGTTCGAGTGCTGGTTGCACCCTTCAAGGTATAGAACCGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTGAGAGTTTTGCCTCCCCAAGACAGCGACAAGAAGAAAAAGGGCAGCAATATGAGTCCTCATAATAATAACAACAATAACAGTAACCATTGTTGTTTGTTTTGTCATTGTTCATCCACCTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCCTCTTCTTCTTCCTCTTCCCCTTCTAGGTTTGAGCCTGGCCACCGTCACGGTGTTGTGAGCTACAAGGATGTGTTCTCTGAGCTTATGTGCTCCATGGAGGCTTTGAATTTTGGTGAGGCTTCGTCTGTCTCTGCTTCTAAGCCTCATACTCTTCTGTCTTGGCATGATGTCTCTGAGGATCATAAGCAGTTCAATGTTCATTCACCAACCATAGCTACCCGTGGAAGCTTTTCCAATAATGCGAATGGAAGGTTTTGGAGGGAAGAAAGTGGAAGCTTTTCCATGAATAGAAGTGGAAGATTTTTTAGGGAAGAAAGTGGGGTTGTTGATGATGTCATTGCCCCAGATCTGGCGTGGGTTAATGACTTGCTGATGTAG 1086 0.5028 MSTICAEHKFQLQPSHQLLSLKKSLRDLDIPPRKLLTRRSAADIFSDDILLHKYLAHTKSMESDDSDDVGDPYASDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDSDKKKKGSNMSPHNNNNNNSNHCCLFCHCSSTCSPTSTLFGMSHFSPPLSPSSSSSSPSRFEPGHRHGVVSYKDVFSELMCSMEALNFGEASSVSASKPHTLLSWHDVSEDHKQFNVHSPTIATRGSFSNNANGRFWREESGSFSMNRSGRFFREESGVVDDVIAPDLAWVNDLLM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00759 361 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Vian5g00759 361 MobiDBLite consensus disorder prediction 180 199 - -
Vian5g00759 361 Gene3D - 117 181 - -
Vian5g00759 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Vian5g00759 361 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Vian5g00759 361 PANTHER UNKEMPT FAMILY MEMBER 52 360 IPR045234 -
Vian5g00759 361 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Vian5g00759 361 SMART c3hfinal6 152 175 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00759 Vian-Chr5 27070207 27071292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00759 73 243 C2H2 Transcription Factor Family AT5G12850 49.708 7.12e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian5g00759 zf-CCCH 9.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00759 K23047 - gmx:100820375 506.138