Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00741 ATGTTCGTGTTTTTTCTTTTCTTCCTCTTCCTTCTCTCTCCTCCGCGATTCTCTCTCTCTCTAACCCAAGACGGCCTTTTCCTCCTCGAGGCGCGCAGCCGCCTCTCCGACCCCCAGAACTCACTCTCCTCCTGGAACCCCGCCGCCTCCACCCCCTGCCAGTGGAGGGGCGTCACCTGCAACAATCATTCCGCCGCCGTCATCGCCATCGATCTCTCTTACTCCTTCCTCTCCGGCCCCTTCCCCGCCGCCCTCTGCCGCCTCCCCTCCCTCTCTTCCCTCAACCTCTCTTACAACCTCATCAACTCCACCCTCTCCGCCGTCTCTCTCTGCCGCTCCCTCCTCCATCTCGACCTCTCCCAAAACGCCCTTGTGGGTCCCATCGACTCCCTCGCCGCACTCACCTCTCTCCGCTACCTCGACCTCTCCGGCAACAACCTCTCCGGAGAAATTCCCGAGACCCTCGCTGCCCTACCCCACCTCGAAACACTCAACCTCGTTAGCAATCTTCTCACAGGTACCATCACCGCTTCACTCGGGAACCTTACTTCGCTGAAACGCCTTCAACTTGCTTACAACTTGTTCAAGCCGGGTCCCATGCCGAGTGAACTCGGGAAACTCGGAAACCTTGAAACGCTTTTTCTCGCTCTGTGCAACCTTCAAGGTCCCATTCCAGACACCTTCAGCAATCTCGTTAACTTGACAAGCCTCGACTTGTCTCAGAACAGCATCACCGGTAACATTCCGCAATGGTTCACGCGTTTAACGCGTGTGACCCAAATTGAGCTTTACCAAAACTCGCTCTCTGGGGAGCTACCCAGAGGAATGTCGAAGATGACGAGTTTGAAACTATTTGACGCGTCGAGGAACGAGTTGACTGGGACGATTCCGACCGAGTTGTGTGAGTTGCCACTCCAGTCACTGAATTTATTTGAGAACAAACTCGAAGGGTTTTTGCCGGGGGCCATTGCGCGTTCCCCGAACCTCTCTGAACTCAAACTTTTCAGTAACAGACTTATTGGAACATTGCCGAGTGATTTGGGCAGTAACTCACCGTTGAACCATATTGACGTTTCGCATAACCGGTTTTACGGTGAAATTCCGGCGAACATTTGCCGGCGGGGCCAGCTTGAGCAGCTAATCTTGATGTACAATTCGTTTTCGGGTGAAATTCCCGAGAGTCTCGGGAAATGCAAGAGTTTAATGAGGGTTCGGTTAAGAAACAATAATCTCTCGGGAAATGTTCCTGAAGGGGTTTGGAGTTTGCCCCGTTTGCATTTGCTTGAGCTTTTGGAAAATCACTTTTCTGGGTACATTTCTAAGGCGATTTCTGGTTCTTCCAGCTTGTCAAATTTGTTGCTTTCAAATAACCGGTTTTCTGGGTCGATTCCTGAGGAAATTGGGTTATTGGACAATCTTGTGGAGTTTGCTGCTAGTAATAATAATCTCTCGGGTCAGATTCCAGGGAGTATGGTGAAGTTGAAGCAGTTAGTTAATCTCGACCTTAGTTCTAATAATCTTTCTGGTGATCTTAATTTTGGTGGAATTGGTTACTTGAGTAAGGTCACTGACCTTAATCTGTCACATAATAGGTTGGATGGAAATGTTCCAAGTGAATTAGGAAGCTTTCCTGTGCTTAATTATCTTGATCTTTCTTGGAACAGTTTCTCTGGGGAGATCCCATTGCAGTTGCAAAATTTGAGACTATCTGAGCTGAATTTGTCTTACAACCAGCTTTCTGGGGATATTCCTCCTCTTTATGCCAATGCCAAGTACAAAACGAGTTTTATAGGGAATCCTGGTCTCTGTAGTCATCTCCCTGGGCTTTGTAATTGTTATGGTAGGAATAAGAACTGGAGGCACACATGGATTTTATGGTCCATTTTTGTGCTTGCTGGAGTTGTGTTCATTATTGGGGTGGCTTGGTTTTACTTCAGGTACAGGAAGGTGAAGAAAATGAAGAAAGGGTTATGCACTTCGAGTTGGAAGTCGTTTCACAAGCTGCAGTTTAGTGGGTTAGAGGTTGCTAAGTTGCTGAATGAGGCCAACGTGATAGGAAAGGGAGCATCCGGGAAGGTGTACAAGGTGGTGCTCAGCAACGGTGAGGTGGTGGCAGTGAAAAAAATGAGTGTAGGAGCCCCAAAGAAAGTGGATGAAAATGGTGGTTCCAGAAAAGATGAATTTGATGCTGAAGTAGAAGCACTGGGGAGGATCAGACACAAGAATATTGTGAGGTTGTGGTGTTGCTGCAACAGATCATACGGCTACATTGCACCAGAATACGCATACACTCTGAGGGTGAGTGAGAAGTGTGACATATACAGTTTTGGAGTGGTGATTTTGGAGTTGATAACTGGGAGACCCCCCATTGATCCAGAGTATGGTGAAAATGGTTTGGTGAAATGGGTTTCCTCTGCATTGGAACATGAAGGAGTGGATCATGTAGTTGATCCTACGCTGGACTACAGATTCAGGGAAGAAATAAGCAAGGTGTTGAGTGTAGGTCTGCAGTGCACCAGCTCCAACCCAATAACTCGCCCCACAATGAGAAAAGTGGTTAAAATGCTTCGTGAGGTTACAGCAGTGCCCAAACGCACAAGTGTAAACGATGGAAATGAATGA 2622 0.4809 MFVFFLFFLFLLSPPRFSLSLTQDGLFLLEARSRLSDPQNSLSSWNPAASTPCQWRGVTCNNHSAAVIAIDLSYSFLSGPFPAALCRLPSLSSLNLSYNLINSTLSAVSLCRSLLHLDLSQNALVGPIDSLAALTSLRYLDLSGNNLSGEIPETLAALPHLETLNLVSNLLTGTITASLGNLTSLKRLQLAYNLFKPGPMPSELGKLGNLETLFLALCNLQGPIPDTFSNLVNLTSLDLSQNSITGNIPQWFTRLTRVTQIELYQNSLSGELPRGMSKMTSLKLFDASRNELTGTIPTELCELPLQSLNLFENKLEGFLPGAIARSPNLSELKLFSNRLIGTLPSDLGSNSPLNHIDVSHNRFYGEIPANICRRGQLEQLILMYNSFSGEIPESLGKCKSLMRVRLRNNNLSGNVPEGVWSLPRLHLLELLENHFSGYISKAISGSSSLSNLLLSNNRFSGSIPEEIGLLDNLVEFAASNNNLSGQIPGSMVKLKQLVNLDLSSNNLSGDLNFGGIGYLSKVTDLNLSHNRLDGNVPSELGSFPVLNYLDLSWNSFSGEIPLQLQNLRLSELNLSYNQLSGDIPPLYANAKYKTSFIGNPGLCSHLPGLCNCYGRNKNWRHTWILWSIFVLAGVVFIIGVAWFYFRYRKVKKMKKGLCTSSWKSFHKLQFSGLEVAKLLNEANVIGKGASGKVYKVVLSNGEVVAVKKMSVGAPKKVDENGGSRKDEFDAEVEALGRIRHKNIVRLWCCCNRSYGYIAPEYAYTLRVSEKCDIYSFGVVILELITGRPPIDPEYGENGLVKWVSSALEHEGVDHVVDPTLDYRFREEISKVLSVGLQCTSSNPITRPTMRKVVKMLREVTAVPKRTSVNDGNE 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00741 873 Pfam Protein tyrosine and serine/threonine kinase 755 856 IPR001245 GO:0004672|GO:0006468
Vian5g00741 873 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 753 857 - -
Vian5g00741 873 ProSiteProfiles Leucine-rich repeat profile. 136 159 IPR001611 GO:0005515
Vian5g00741 873 ProSitePatterns Protein kinases ATP-binding region signature. 685 716 IPR017441 GO:0005524
Vian5g00741 873 ProSiteProfiles Leucine-rich repeat profile. 568 590 IPR001611 GO:0005515
Vian5g00741 873 SUPERFAMILY Protein kinase-like (PK-like) 682 862 IPR011009 -
Vian5g00741 873 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 182 - -
Vian5g00741 873 Pfam Leucine Rich repeats (2 copies) 135 175 IPR025875 -
Vian5g00741 873 SUPERFAMILY L domain-like 22 301 - -
Vian5g00741 873 Gene3D Ribonuclease Inhibitor 20 170 IPR032675 -
Vian5g00741 873 Gene3D Ribonuclease Inhibitor 276 613 IPR032675 -
Vian5g00741 873 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vian5g00741 873 FunFam Receptor-like protein kinase HSL1 304 612 - -
Vian5g00741 873 Pfam Protein kinase domain 681 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00741 873 Gene3D Ribonuclease Inhibitor 171 274 IPR032675 -
Vian5g00741 873 Gene3D Phosphorylase Kinase; domain 1 645 754 - -
Vian5g00741 873 PRINTS Leucine-rich repeat signature 137 150 - -
Vian5g00741 873 PRINTS Leucine-rich repeat signature 231 244 - -
Vian5g00741 873 Gene3D Transferase(Phosphotransferase) domain 1 755 872 - -
Vian5g00741 873 SMART LRR_typ_2 88 112 IPR003591 -
Vian5g00741 873 SMART LRR_typ_2 134 157 IPR003591 -
Vian5g00741 873 SMART LRR_typ_2 158 182 IPR003591 -
Vian5g00741 873 SMART LRR_typ_2 519 543 IPR003591 -
Vian5g00741 873 SMART LRR_typ_2 231 254 IPR003591 -
Vian5g00741 873 SMART LRR_typ_2 279 303 IPR003591 -
Vian5g00741 873 SMART LRR_typ_2 207 230 IPR003591 -
Vian5g00741 873 SUPERFAMILY RNI-like 262 591 - -
Vian5g00741 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 206 299 - -
Vian5g00741 873 Pfam Leucine rich repeat 209 268 IPR001611 GO:0005515
Vian5g00741 873 ProSiteProfiles Protein kinase domain profile. 679 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00741 Vian-Chr5 26683133 26686240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00741 717 863 Receptor kinase-like Gene Family AT4G28490 50.000 2.36e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian5g00741 PK_Tyr_Ser-Thr 4.8e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00741 - - gmx:100796415 1066.6