Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00740 ATGACTCAGTGCAGTGACCCTAACATCATAGTGGAGGGACGAAAGGATAGCTTAATTAGAACTTGTCCTACATGTGGTCATCATATCAAATGCCAAGAACAGGGAGGTGGAATTCATGACTTACCAGGACTTCCTGCTGGTGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCGAAGGTTCGATCTGATATTCATAAGCTTCATCCTCTCATTGATGAGTTTATTCCCACTCTTGAAGGCGAGAATGGAATCTGCTATACTCACCCAGAGAAATTGCCAGGAGTTAGCAAAGATGGTCTGATCCGGCATTTCTTTCACAGGCCTTCAAAGGCATACACCACAGGAACAAGGAAGAGGAGAAAGGTGCATTCAGATGAAGATGGCAGTGAGACACGTTGGCACAAAACAGGTAAAACAAGGCCAGTCTACAACAGTGCCAAGTTGAAAGGGTACAAGAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGCCAGAGAAGACAAACTGGGTGATGCACCAATACCACCTTGGCAGTGATGAAGAGGAAAAAGAAGGGGAGTTAGTGGTGTCTAAAGTTTTCTACCAAACACAGCCTAGACAGTGCAGTTCCCTCATGAAAGACTCATCAGTTCCTGAGAAAAACATGAAGGGTCAAAGTGTGCATGAGGTGATCAATAGCAGAAACAAAAACAACGGCTTTGTTGAGTATTACCATTCAAATTTCATCTCATTTGATCAAAGTGCTCAACACAGACCAACCACTGCTCAAGTAATTTCCCATTTTCCTGTTCATGAAGGTGCTTCTTTCAACATTCCTTGA 843 0.4235 MTQCSDPNIIVEGRKDSLIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNSAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCSSLMKDSSVPEKNMKGQSVHEVINSRNKNNGFVEYYHSNFISFDQSAQHRPTTAQVISHFPVHEGASFNIP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00740 280 ProSiteProfiles NAC domain profile. 44 203 IPR003441 GO:0003677|GO:0006355
Vian5g00740 280 Pfam No apical meristem (NAM) protein 45 184 IPR003441 GO:0003677|GO:0006355
Vian5g00740 280 MobiDBLite consensus disorder prediction 118 143 - -
Vian5g00740 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 18 237 IPR044799 GO:0003700
Vian5g00740 280 SUPERFAMILY NAC domain 39 203 IPR036093 GO:0003677|GO:0006355
Vian5g00740 280 MobiDBLite consensus disorder prediction 123 142 - -
Vian5g00740 280 Gene3D NAC domain 53 207 IPR036093 GO:0003677|GO:0006355
Vian5g00740 280 FunFam NAC domain-containing protein 73 53 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00740 Vian-Chr5 26665883 26667601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00740 20 218 NAC Transcription Factor Family AT4G28500 79.000 4.39e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian5g00740 NAM 1.6e-22 No_clan