Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00734 ATGCTGAGAAAGATCGATGAAGGAGAAATCATCACAAATGCTTTCCCTCACAACCTAACTGCTTCTGCTGCATCAAATACTAACAATCCTCCTCCTGCTTTGAAGAGGAAGAGGAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTTGTGGCCTTATCACCAAAGACACTCATGGCTACCAACAGATTCTTGTGTGAAACTTGTGGGAAAGGTTTCCAGAGGGATCAAAATCTTCAGCTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCAAGGAAGAGGGTTTATGTGTGTCCAGAGAAGAGTTGTGTCCACCATGACCCTTCAAGGGCTCTTGGAGATTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCCGTGCAGTCGGATTGGAAAGCACACTCCAAGACCTGTGGCACCAGAGAATATAAATGTGACTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCAAGAGTAAATGCATCATCAGACATGAACACTTCTTTAGGGGGTAACGTTGGTTACAACGTGATTGGAACTTCCCTAGGTCATAACATGGCAACCCATTTTTCTTCAATTTTCAAGCCAGTTTCAAGCACAGAAGAAACAAGCAATCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCATCTCCTCAGGCTCAAGAAACAATGGTCAATAACAATTTGAGTGAGATTCATCAACTTGGGTCTTCTACAAGCTCAGCCACGGCATATGGTGGCAACTCACTGGTCCAATGCTCAAATTTTCCACCTTCAAACTATCAACTAAGCTGGGTGTTCAGGACTAAACTTTCCAATGACAGTAACATCCAAAAGCTAACAACAAGCACAACTACATCACTCCCCCTAGGAAACTCGAGTGTTCCTTCTTTGTATAGTTCCCAACACCAACCCCATCAAACATGTTCTTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCTCAGATTGGATCAAGCTCAAGTGATCCTTCATGGCTTGGTAGCATAGGTTTGAAATGTGGTAGCAGTGTTCAAGGACAAGATGGGGATAGCAGTAACAAGTTCGGTGGCATGTACGGTTCAAGTTTAGTTCTGAGCACACTTGGGACTGAACCAGATAACTCTGCACGTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTACTAAATGAAGAAAATGGAGGGGGGCAATTCAGAGATTTCCTCGGTGTTGGTGTGCAAAACCATTTGCCACACTTCATCAATCAACAGGTGGATTTGATTTGA 1407 0.4478 MLRKIDEGEIITNAFPHNLTASAASNTNNPPPALKRKRNLPGNPDPEAEVVALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASSDMNTSLGGNVGYNVIGTSLGHNMATHFSSIFKPVSSTEETSNQTSRGLPLWMGQTSSPQAQETMVNNNLSEIHQLGSSTSSATAYGGNSLVQCSNFPPSNYQLSWVFRTKLSNDSNIQKLTTSTTTSLPLGNSSVPSLYSSQHQPHQTCSSANMSATALLQKAAQIGSSSSDPSWLGSIGLKCGSSVQGQDGDSSNKFGGMYGSSLVLSTLGTEPDNSARDLSQMHPPKRRHVLNEENGGGQFRDFLGVGVQNHLPHFINQQVDLI 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00734 468 Gene3D Classic Zinc Finger 97 188 - -
Vian5g00734 468 MobiDBLite consensus disorder prediction 20 47 - -
Vian5g00734 468 Gene3D Classic Zinc Finger 60 87 - -
Vian5g00734 468 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Vian5g00734 468 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Vian5g00734 468 FunFam protein indeterminate-domain 12-like 43 111 - -
Vian5g00734 468 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 453 IPR031140 -
Vian5g00734 468 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Vian5g00734 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00734 Vian-Chr5 26473784 26476255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00734 31 454 IDZ Gene Family AT1G03840 49.491 5.34e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g00734 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00734 K25870 - gmx:100790620 774.622