Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00710 ATGGATATCTTCCGCAATGATCAAGAACACGACCTCCCATATGTTCCAAACAGTGACGATTCAGACAACGGCACCAGCGAAAACAAAAAGATACTCTACATATCCATGGTTTCATTCACGGTTGTCTTGTTCCTTGTCTTCTCCCTCTACGTCTACGCGCGGTGCATGCTCACGCGCCGATCTCGCCACCGTGCCTCCGTTCGCCGACTCAACCTTGCAGCCCTTCATGTCGCCGACATGGACGCTGCAAACCGCAGGATCGAACCAGCGAACACAGGACTCGATCCTGGCATAGTAGCGTCGCTGCCAACGTTCACGGTGAAGGCAAAGGTTTTAAGAGATAGTAGTGGTGACAATAATAAGAGTGGCGGTGGTGGTGATGCTTCATCGGTAATGGAGTGTGTTGTGTGCTTGAATGCCCTGGAAGGTGAAGAAAAAGTGAAGCTGCTACCCAACTGTAACCACTTTTTTCATGTGAGTTGTATTGACATGTGGCTTGGTTCTCACTCTACGTGCCCTCTTTGTCGGGCCGAGGTTAAACCTCGGATCCAACCACATGATCGTGAAGGTCCTGTTAGTCTTGCTCTTGATAATGCACCACCTCCTATGATTGATGATGGTGTTGATAATGGTGAATCTTTCAAAGGTAATGGTTCGAATTCACGGTTGAGCTCTTTTAGAAGGATGCTTAGCAGGGAAAGATCTTCCAGAAGAGTCCAACCTAATGGCCATGATGAGGATGATGGTGTTGATCATGATTTGGAGAGACAATGA 774 0.4806 MDIFRNDQEHDLPYVPNSDDSDNGTSENKKILYISMVSFTVVLFLVFSLYVYARCMLTRRSRHRASVRRLNLAALHVADMDAANRRIEPANTGLDPGIVASLPTFTVKAKVLRDSSGDNNKSGGGGDASSVMECVVCLNALEGEEKVKLLPNCNHFFHVSCIDMWLGSHSTCPLCRAEVKPRIQPHDREGPVSLALDNAPPPMIDDGVDNGESFKGNGSNSRLSSFRRMLSRERSSRRVQPNGHDEDDGVDHDLERQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00710 257 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Vian5g00710 257 MobiDBLite consensus disorder prediction 185 257 - -
Vian5g00710 257 Pfam Ring finger domain 133 176 IPR001841 -
Vian5g00710 257 SUPERFAMILY RING/U-box 133 183 - -
Vian5g00710 257 CDD RING-H2_EL5-like 133 176 - -
Vian5g00710 257 SMART ring_2 134 175 IPR001841 -
Vian5g00710 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 183 IPR013083 -
Vian5g00710 257 MobiDBLite consensus disorder prediction 227 257 - -
Vian5g00710 257 PANTHER RING-H2 FINGER PROTEIN ATL16 17 181 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00710 Vian-Chr5 25671044 25671817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00710 28 257 C3H Transcription Factor Family AT2G42360 38.397 1.04e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00710 K19038 - gmx:100783358 285.804