Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00709 ATGAGGAGCAGTGTAGGAGATATTGTTCAAGTGGAAGGAGGACACATTGTTAGGTCCACGGGTAGAAAAGATCGCCACAGCAAGGTCTATACTTCCAAAGGGCCTCGTGATCGCCGGGTTAGACTCTCAGCACACACAGCCATTGAGTTCTATGACGTTCAAGACAGACTTGGCTATGACAGACCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCAAAGTCTTCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCATCCACCTATTCATGAGGAAAAGCAGAATGATGCTGCAGGATCAAGTGGAATCATGGCCGTTGAACAACAACAAGAAGAACCTCATCAACAACAGTCAGAGTCTTGTGGCTACAACTTTCAGCTCCATAGGCAACTGGGGGCCTTTATTTCTACCCATGTTGACACTGACCCCATCAATTTTCAAACCAACAACAACTCAGAAGATCTTGGCCTATCTCTCCACTGTTTCCAAGACCACCCTGGCCTTATTAACTGGCCATCGCAACAAGGTGCAAATCAAGCACCTCCTTCAAATGAGCACCAAATTCAAACCCTTTTTGCTGGCTCAACCCCAGTTTCGTTTGAGAACCATTATCAAAGAACTGTGACTTGGAACAATGAAGCAACAACCGGGGATCATGTGAGCAGAATGGGATTCTTTCTCAACTCACAGCCATTTATAGGCCAAGGTTCTGCTTCAGCTTATGCTCAAAGTGAGACCCTTCAGTCCAGTTTTTCATTTCCAATGACTTCCTCTGAGCATCAGAGGCCCCAACCAGTTCACCAACCTTCCATCTTTGGCAGCAGGTTTGCTGTCTCTGATGGATTAACCGGTTTCTGCATTCCAGATAGAATTCAAGATGTGGAAGAGAACCATGGAGATGCTTCCAATAGGCCATCTTCTTCTCCTAGTTCTATCCACTGA 945 0.4646 MRSSVGDIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHPPIHEEKQNDAAGSSGIMAVEQQQEEPHQQQSESCGYNFQLHRQLGAFISTHVDTDPINFQTNNNSEDLGLSLHCFQDHPGLINWPSQQGANQAPPSNEHQIQTLFAGSTPVSFENHYQRTVTWNNEATTGDHVSRMGFFLNSQPFIGQGSASAYAQSETLQSSFSFPMTSSEHQRPQPVHQPSIFGSRFAVSDGLTGFCIPDRIQDVEENHGDASNRPSSSPSSIH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00709 314 MobiDBLite consensus disorder prediction 18 37 - -
Vian5g00709 314 MobiDBLite consensus disorder prediction 82 102 - -
Vian5g00709 314 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Vian5g00709 314 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 269 IPR005333 GO:0003700
Vian5g00709 314 Pfam TCP family transcription factor 21 117 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00709 Vian-Chr5 25652657 25653601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00709 5 311 TCP Transcription Factor Family AT1G53230 35.620 3.11e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian5g00709 TCP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00709 - - vum:124834546 625.935