Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00701 ATGGAAATCATGGAAATGGAGGAATTTTTATGGGGTGGTGACATTGATGGGGATGTTCCTAAGGGGAACAGTGATGGTTTTGAAGGAAGCAGTGGAATGATTGGAAGTGGGTGTGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCTCCTGTGAAATTGGAAAGAAAGGGGGTGTCCACTGAGAGAACCACTGAAGCTTTGAAGAACCATAGCGAGGCAGAGAGGAGAAGGAGGGCAAGGATTAATGCACATCTTGATACTCTTCGCAGTGTCATTCCAGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATCAGACATTTGAAAGAGCTGAAAAGGAATGCAGCACAGGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCTGGCCTGTTGTCTGATATAAGACAAGCACTAGATTCTCTTCATCTTATGATAACAAGGGCAGATATTGCAACCTTAGAAGGCAGAATGAAGAATGTTTTTGTGATCATTAGCTGCAAAGAACACAACTTTGAAGATGCTTCATACCGTCAGTTTCTGGCTGGTTCTGTTCACCAAGCTCTTAGGTCTGTGCTCAATAGATTTTCTGTTTCACAGGACATTTTAGGAACCAGGAAAAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTGGAAGATTTCTTGTAA 786 0.4148 MEIMEMEEFLWGGDIDGDVPKGNSDGFEGSSGMIGSGCGSSFSLVLDRERGELVEAPVKLERKGVSTERTTEALKNHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKRNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDSLHLMITRADIATLEGRMKNVFVIISCKEHNFEDASYRQFLAGSVHQALRSVLNRFSVSQDILGTRKRRRISIFSSSSLEDFL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00701 261 PANTHER TRANSCRIPTION FACTOR BHLH30 45 253 IPR045847 GO:0003700|GO:0006355
Vian5g00701 261 SMART finulus 78 127 IPR011598 GO:0046983
Vian5g00701 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Vian5g00701 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 125 IPR036638 GO:0046983
Vian5g00701 261 CDD ACT_UUR-ACR-like 160 231 - -
Vian5g00701 261 Gene3D - 66 129 IPR036638 GO:0046983
Vian5g00701 261 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00701 Vian-Chr5 25494867 25496095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00701 26 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.250 2.11e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian5g00701 HLH 7.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00701 - - gmx:100788819 428.328