Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00672 ATGGTCGTAGTAAATCAGTGTAGAGAAAATCAAGATTTGAAAGGAAAATCAAAGAAAAACGAGGAAGAAGAGAGAAAAAAAGAACCTTTGCATTTGTACAAATTGAGGATCTTCAAGCAAGTGAAGCCATTAGCGATGACGACGAGGTCGGAATCGGTGACGCCAGGTTCCAAACCCCAAATAATCGACCTCGACACCCCCAATCCCCTCACATCGCTTCACAAGAAACCTCAATTAAATTGGAAACCTTCTCTGCAAATCTTTCTCCCCAAGAAGGCCAAGTGGATCATATTTGGGAAACCGGATCCCAACCTGACTGTGGTATTGCTAGAGAACCAGCCAGAGAAGAAGCACTACAGAGGAGTCCACCAGCGGCCTTGGGTAAAGTTCGCCGCCGAGATCCGCAACCCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTTGACATCGCCATCGAGGTCGCCAAGGCCTACGACTGTGTTGGCTTCAGGCTCCGTGACTCAAAGGCCATTCTCAACTTCTCGCTTGAAGCAGGCATGGTAAGCGGCGTCGTCGAGGCCGAAGGCGAAAGGAAACGACAACGCGAGGAGAAGGAGGTAGAGGAAGTGAAGTCGGTGGTGAAGAAGGAGAAAACAATGGAACAGGAGGTGAACTGTTTTCGGGAGATGCCGTTAACGCCTTTAACTCCAATCTCGAACCTAATTTGA 711 0.4923 MVVVNQCRENQDLKGKSKKNEEEERKKEPLHLYKLRIFKQVKPLAMTTRSESVTPGSKPQIIDLDTPNPLTSLHKKPQLNWKPSLQIFLPKKAKWIIFGKPDPNLTVVLLENQPEKKHYRGVHQRPWVKFAAEIRNPNKRGSRVWLGTFDIAIEVAKAYDCVGFRLRDSKAILNFSLEAGMVSGVVEAEGERKRQREEKEVEEVKSVVKKEKTMEQEVNCFREMPLTPLTPISNLI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00672 236 PANTHER DNA-BINDING DOMAIN 48 196 IPR044808 GO:0003700|GO:0009873
Vian5g00672 236 MobiDBLite consensus disorder prediction 7 27 - -
Vian5g00672 236 MobiDBLite consensus disorder prediction 11 27 - -
Vian5g00672 236 Coils Coil 185 214 - -
Vian5g00672 236 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Vian5g00672 236 SUPERFAMILY DNA-binding domain 118 177 IPR016177 GO:0003677
Vian5g00672 236 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Vian5g00672 236 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vian5g00672 236 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Vian5g00672 236 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Vian5g00672 236 Pfam AP2 domain 118 161 IPR001471 GO:0003700|GO:0006355
Vian5g00672 236 Gene3D AP2/ERF domain 117 178 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00672 Vian-Chr5 24334849 24335648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00672 50 226 AP2-EREBP Transcription Factor Family AT5G47230 46.602 2.67e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian5g00672 AP2 7.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00672 K09286 - gmx:100816039 210.305