Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00668 ATGTCCGGTGCGGGCCCTATTTCCCAGGACTGGGAACCCGTCGTCCTCCGCAAGAAAGCTCCCACCGCCGCGGCCAAGACGGACGAGAAAGCCGTCAACGCCGCCCGCCGCGCCGGCGCCGATATTGAAACCCAAAAAAAATATAATGCTGGGACAAACAAAGCAGCCTCTAGCAGCACTTCATTGAACACCAAGAGGCTGGATGAGGACACAGAGAATCTAGCACATGAGAAAGTACCAACTGAGCTTAAGAAGGCTATAATGCAAGCTAGGATGGATAAGAAGCTTACTCAGGCTCAGCTTGCTCAAGTGATCAACGAGAAACCTCAAGTGATCCAGGAATACGAATCAGGGAAAGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAACTAAACTTCGTGGCAAGAAATAA 429 0.5058 MSGAGPISQDWEPVVLRKKAPTAAAKTDEKAVNAARRAGADIETQKKYNAGTNKAASSSTSLNTKRLDEDTENLAHEKVPTELKKAIMQARMDKKLTQAQLAQVINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00668 142 MobiDBLite consensus disorder prediction 43 74 - -
Vian5g00668 142 MobiDBLite consensus disorder prediction 46 64 - -
Vian5g00668 142 Gene3D - 71 142 IPR010982 GO:0003677
Vian5g00668 142 SMART mbf_short4 86 141 IPR001387 -
Vian5g00668 142 Pfam Helix-turn-helix 87 138 IPR001387 -
Vian5g00668 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Vian5g00668 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Vian5g00668 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Vian5g00668 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Vian5g00668 142 CDD HTH_XRE 85 138 IPR001387 -
Vian5g00668 142 FunFam Multiprotein bridging factor 1 71 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00668 Vian-Chr5 24120399 24122853 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vian5g00668 MBF1 2.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00668 K03627 - gmx:100500420 261.922