Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00662 ATGGCCTCCATGCCCATGGGGCACCACCAACACCAACCGCCGTCAGCGGCGTTGCCTTTGCAGCCATCACAACCGCAGCAGTCTCAGCCGCAACACGAAGTGCCACGCCGGAGCTCCGATATGGAGACCGATAAGCTCCGATCACGTCGATTCGCCTCGGAAGCTTTGGAGGAATTAGTGTCCTTAGATTCTGTTTCTCTTTCCACTTTGCCTTTCTTCAACTCACAATCTGATCTTTGGCTGATTTCATCTGGTAACCTTCTGATGCTTTATGTTCCATCGCTGTGCAATTTTCTTCTCGATATGTCAACTACTGTCATTGAGGGGAATGATGCCGTCACAGGCCACATAATCTCCACCACTATTGGAGGCAAAAATGGGGAACCTAAACAAACAATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGCCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGAGATACAAAAATCGTGAATTGCAGTTAATGCGTTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCCACAACAAGCAGAGATGAACTTTTTCTGAACTTAGTAATGGAATATGTCCCTGAGACAATGTACCGAGTTATAAAACACTACAATACTATGAACCAGAGGATGCCTCTCATCTATGCAAAACTGTACACATATCAAATCTTTAGGGGATTAGCATATATCCATACCACACTGGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCACCCTCTTACTCACCAAGTTAAGCTTTGTGATTTTGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTTGGTGCAACAGAATACACAGCTTCTATTGATATATGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCACTATTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTCGGTACCCCCACACGAGAGGAAATTCGTTGCCTGAACTCAGAATATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCATAAGCGAATGCCTCCGGAAGCAATTGACCTTGCATCCAGGCTTCTCCAATACTCACCTAGTCTCCGTTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGCGAGCCAAATGCTCGTCTACCTAATGGCCGTCCATTGCCCCCGCTTTTCAACTTTAAACAGGAATTGGCTGGAGTATCACCTGAAATGGTCAATAGGCTGATCCCAGAGCATATTAGACGGCAGACTGGTCTCAGTTCCCCTCATTCCACCGGTACATAA 1428 0.4517 MASMPMGHHQHQPPSAALPLQPSQPQQSQPQHEVPRRSSDMETDKLRSRRFASEALEELVSLDSVSLSTLPFFNSQSDLWLISSGNLLMLYVPSLCNFLLDMSTTVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEPVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVIKHYNTMNQRMPLIYAKLYTYQIFRGLAYIHTTLGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTASIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCLNSEYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGVSPEMVNRLIPEHIRRQTGLSSPHSTGT 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00662 475 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 101 464 - -
Vian5g00662 475 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00662 475 ProSitePatterns Protein kinases ATP-binding region signature. 141 165 IPR017441 GO:0005524
Vian5g00662 475 FunFam Shaggy-related protein kinase kappa 215 462 - -
Vian5g00662 475 Gene3D Phosphorylase Kinase; domain 1 120 214 - -
Vian5g00662 475 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00662 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Vian5g00662 475 FunFam Glycogen synthase kinase-3 beta 119 214 - -
Vian5g00662 475 SUPERFAMILY Protein kinase-like (PK-like) 134 444 IPR011009 -
Vian5g00662 475 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00662 475 Gene3D Transferase(Phosphotransferase) domain 1 215 462 - -
Vian5g00662 475 CDD STKc_GSK3 130 422 IPR039192 -
Vian5g00662 475 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00662 Vian-Chr5 23960429 23964799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00662 139 457 MAP Kinase Gene Family AT3G59790 35.928 5.41e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vian5g00662 Pkinase 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00662 K14502 - gmx:100810924 738.799