Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00637 ATGAGCCACCACAGGCCCAACTTCACACATCTGCAACGGCAAGGAGGTTTTAGATCCTATGATGGCCACACTTACAATCATCATGAATCCAATGAAGTGCCTGTGTTTTACAGATCTAACTCTACTCAAGCCAGCGATGAAAGAACTTCCGATGTATTACCTCGACAACGGGTTTGGGCATGCATACATCCTGTAGGATTCCACCACATACCTTATTTTCCATCAGCAGCACCTAGAAGACAACAAATTATTCAGAATGAGCATATGGGAAGGCTGAGAGATATTTTCCTTCAGCCACCTTCAAGATATACATTCCAAACAAGCACACAAGCTGCCCCAGTGGTAGAAATTTCCAAAACTACAGTTTTGAGCAAGCTTGAGAAAGTAGTGTATGCTAGGAAGCTGAACTTATATTACAGAAACAATGCTGAAGAAAAACATTTGAAAGAGAAGAAGGAAAAGGATGAAGATGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTAAGACTGGTGAAGAGGTGATGCTCACTCCATGCAAGCACATGTTTCATGAGGATTGCATAGTGCCGTGGCTAACAACTAAGGGCCAGTGCCCAGTTTGTAGGCGTGTGATCTGTGAGATGGGATGTGGGAACCCTTCATCCTTCAGCAACAATAACTGGACCACTTTGGAATCTAGCAACCTATTTAATGGAGAGCTTTTATCAGTTTTTAGGGACATGGAAGAAGCTTTTCAATATTCTTCAGAAGTCTGTGAACCAACTGAAGATGAGGATTCTGATATCCATGAGTATATGGCTGGAAGAACGATACTGGCTGCTTTGGCTTTGGCATTCAAGAGCATATTGATTTGGGAATCAAGGCTGAAGGGATGGGAAGTTGATGATCTGGTCCTTGGGTTAAAGATATTCTGTTGCTTGATGTTTGAGGTAGCAGGACTCACATTAGCTTGGTATGATCCTTCAACCGGTATTTATGGAATGGATTTCTTTGTTGTTTTGGAGCGTCCTGGCTACCGTGTTGGCCGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGAGTCACAAAGGACGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTGTTTAG 1149 0.4334 MSHHRPNFTHLQRQGGFRSYDGHTYNHHESNEVPVFYRSNSTQASDERTSDVLPRQRVWACIHPVGFHHIPYFPSAAPRRQQIIQNEHMGRLRDIFLQPPSRYTFQTSTQAAPVVEISKTTVLSKLEKVVYARKLNLYYRNNAEEKHLKEKKEKDEDGKRCAICLEDFKTGEEVMLTPCKHMFHEDCIVPWLTTKGQCPVCRRVICEMGCGNPSSFSNNNWTTLESSNLFNGELLSVFRDMEEAFQYSSEVCEPTEDEDSDIHEYMAGRTILAALALAFKSILIWESRLKGWEVDDLVLGLKIFCCLMFEVAGLTLAWYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKDDAMKWFQVKYEGVILNKSQAIV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00637 382 SUPERFAMILY RL5-like 319 374 IPR022803 -
Vian5g00637 382 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Vian5g00637 382 SUPERFAMILY RING/U-box 151 208 - -
Vian5g00637 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 206 IPR013083 -
Vian5g00637 382 FunFam RING/U-box superfamily protein 145 220 - -
Vian5g00637 382 Pfam Ring finger domain 160 202 IPR001841 -
Vian5g00637 382 Gene3D - 296 378 IPR022803 -
Vian5g00637 382 SMART ring_2 161 201 IPR001841 -
Vian5g00637 382 SMART ringv_2 160 202 IPR011016 GO:0008270
Vian5g00637 382 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 316 377 IPR002132 GO:0003735|GO:0005840|GO:0006412
Vian5g00637 382 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00637 Vian-Chr5 22989662 22995412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00637 280 381 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 66.346 2.46e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00637 - - vra:106780201 470.7