Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00620 ATGGCTTGCAACAAAAGACAACGGAGCTCTTCATCACACACCAATAATTTTGATGTGTTTGTTAGCTTTAGAGGCGCAGATACTCGTAACGGTTTCACAAATCACCTTTTTGCAGCTCTTCAAAGAAAAGGAGTTGTTGCTTTCACAGATGACCAAACAATCCAGAAAGGGGACTTTTTGGAGTCTGAACTCTTGCTCGCAATTGAAGGATCACGCGTTTTCATTGTTGTCTTCTCAAAGGACTATGCATCATCCACATGGTGCATGAAAGAGCTTACGAAGATCGTCGATTGGGTTGAAGTAACAGGTCGAAGTTTGCTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGAAAACAGAGTGGAGAGTTTGCAAAAGCTTTTGCTGAACACGAAGAAAGGTTCAAAGATGACTTGGAAATGGTAAAAGAATGGAGGGCAGCTCTCAAAACAAGCTGCGATCGTTGTGGGTGGGATGTGCAAAATAAGCAACAATATGAAGAAATTGAAAACGTTGTTGAAGAGGTAATCAACATATTGGGTCGTGATCAAATTTGGAATTTTGGCGATGATTTAGTTGACATGCATTCTCGTGTTAAAAAATTGGAAGAACTTCTAGATCTGAGTGCTAATGATATTGTTCACCTTGTGGGAATTGTTGGAATGGGTGGAATAGGAAAGACCACACTTGCAACTGCATTGTTCAATAAAATCTCTCCTCAATTTAATGCTTGTTGTTACCATGATGATTTAAGCAAAATTTATTGTAATTTTGGAGCAGCAAGTGCACAAAAACAACTTCTTTGTCAAGCTCTAAATCAAGGAAATATCGAGATACACAATGCTTCCCATGGAACTATGTTGATAAGAACTAGATTATGTCACTTAAAAGCGCTTGTTGTTGTTGATAATGTTGATCAAGTTGAACAATTAAAGAAATTGGGTTTGCAATCTGAATATCTGGGTGCAGGGAGCAGAATCATCATAATTTCTAGAAATTGTCGTATCTTGCAAAATTACGGAGTAAATAAAGTTTACGAAGTTGAAGTCTTGGACAAAACTCAATCTCTTCAATTACTTCGCAAGAAAGCTTTTAGATCGAATGATATTGGGAAAGAACATAAAGGGTTGACATTAGATATACTGAAGTATGTGAATGGTCTTCCTTTAGCTATTGAAGTATTGGGCTCATTTTTACTTGATCGAGATGTTTGTGAATGGAGAAGTGCATTGACTAGAATGGAAGAAAATCCAAGCAAAGATATCATGGATGTGTTGCGAATAAGTTATGATGGATTGGAGAATATAGAGAAAGAAATATTTCTAGATATTGCTTGTTTCTTCTCCAATAATAATTCCTACTCATGGGAGCCAACAGTGAAGAAATTTTTGGACTATCGACAATTTTATCCTGACATTGGTATGAAAGTTCTGATTGAGAAGTCACTTATAAGTCGTCAAAATGGAAATATTAAAATGCATGACTTGTTGAAAGAGTTGGGTAAGAGTATTGTCCGAGAAAAAGCACCCAAAGAACCAAGGAAGTGGAGCAGGTTATGGAACTACAAGGATCTCCAAAAAGTCATGAAAATAAATAAGGAAGCCAAAAATGTTGAAGCTATATTTATTGAACAACATGAAAAAGAGTTTCTACAAGGAAGAATAAGAGTGGATACTTTATCAAAAATGGATCAGCTTGAGTTGCTCATTCTGAAGAATGTGAACTGTTATGGAACTCTCAATTTCATTTCTAATGAACTGAGATATCTATTTTGGAATCACTTTCCTTGGTTGTCTTTGCCATCAACTTTCTTTCCAGATCAACTTGTAGAATTGATCCTACCTCATAGCAATATCAAGCAATTATGGGAAGGAAAAAAGGATTACTTGGTCCCTCGGATGGAAATTGTTATTCCTGGAATTGAAATTCCAAAATGGTTCAGTAAACAAAACGCAAGTACATCAATAAGTATGGACCCATCTGCTGTTATAGATGACCCAAATTGGATAGGTGTTTCCATTTGTGCTCTATTTGTCACACACGAAGATACCATGCATGATCTTCAAGCAGTTAAATTTGAAACTTGGGTTGAGAGTCTTCCAGGTTTACGTTTTATGGTGAAGAAGTGCGGGTATCGTTGGGTATTTAAGGAGGATCTTCAACAATTCAACTCAGACAAGTTTTTCAGCAGAAATTCTTCATCACGGAAGAGGAAGCTTCTAACAAGATTCATTTGGAGACATTTGAAAAAGGAGAAGGAGGAACTACAACAACTTAGGGAAAAGTATGCTTGTGATTGGATTTTGGATGTCGACAATGTGCGGAAGGATGAAGTGTTGCAAGATTTAAGGCTTATGTAA 2364 0.3684 MACNKRQRSSSSHTNNFDVFVSFRGADTRNGFTNHLFAALQRKGVVAFTDDQTIQKGDFLESELLLAIEGSRVFIVVFSKDYASSTWCMKELTKIVDWVEVTGRSLLPIFYDVTPSEVRKQSGEFAKAFAEHEERFKDDLEMVKEWRAALKTSCDRCGWDVQNKQQYEEIENVVEEVINILGRDQIWNFGDDLVDMHSRVKKLEELLDLSANDIVHLVGIVGMGGIGKTTLATALFNKISPQFNACCYHDDLSKIYCNFGAASAQKQLLCQALNQGNIEIHNASHGTMLIRTRLCHLKALVVVDNVDQVEQLKKLGLQSEYLGAGSRIIIISRNCRILQNYGVNKVYEVEVLDKTQSLQLLRKKAFRSNDIGKEHKGLTLDILKYVNGLPLAIEVLGSFLLDRDVCEWRSALTRMEENPSKDIMDVLRISYDGLENIEKEIFLDIACFFSNNNSYSWEPTVKKFLDYRQFYPDIGMKVLIEKSLISRQNGNIKMHDLLKELGKSIVREKAPKEPRKWSRLWNYKDLQKVMKINKEAKNVEAIFIEQHEKEFLQGRIRVDTLSKMDQLELLILKNVNCYGTLNFISNELRYLFWNHFPWLSLPSTFFPDQLVELILPHSNIKQLWEGKKDYLVPRMEIVIPGIEIPKWFSKQNASTSISMDPSAVIDDPNWIGVSICALFVTHEDTMHDLQAVKFETWVESLPGLRFMVKKCGYRWVFKEDLQQFNSDKFFSRNSSSRKRKLLTRFIWRHLKKEKEELQQLREKYACDWILDVDNVRKDEVLQDLRLM 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00620 787 Pfam NB-ARC domain 200 423 IPR002182 GO:0043531
Vian5g00620 787 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 664 IPR044974 GO:0006952
Vian5g00620 787 Gene3D - 183 350 IPR027417 -
Vian5g00620 787 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Vian5g00620 787 Gene3D - 10 182 IPR035897 -
Vian5g00620 787 PRINTS Disease resistance protein signature 386 400 - -
Vian5g00620 787 PRINTS Disease resistance protein signature 217 232 - -
Vian5g00620 787 PRINTS Disease resistance protein signature 293 307 - -
Vian5g00620 787 SUPERFAMILY "Winged helix" DNA-binding domain 422 530 IPR036390 -
Vian5g00620 787 Pfam TIR domain 16 174 IPR000157 GO:0007165
Vian5g00620 787 SMART till_3 16 156 IPR000157 GO:0007165
Vian5g00620 787 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Vian5g00620 787 Gene3D - 351 435 IPR042197 -
Vian5g00620 787 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Vian5g00620 787 ProSiteProfiles TIR domain profile. 15 177 IPR000157 GO:0007165
Vian5g00620 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 445 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00620 Vian-Chr5 22255540 22260796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00620 12 628 WRKY Transcription Factor Family AT4G12020 29.459 2.77e-65 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00620 - - vra:106780706 1155.97