Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00617 ATGGCCTTGAGCTTCAGAGGGTCCCTCACCGACGTGAAGCTTCAGAACATTCTCGTTTTCGACGGCGAGGTGAAAATCGCGGACTTCGGGCTCACCAAGGAGAAGGGGGAGAAACAAGGGAAATGCGAGTTCAGGGGAACGTCGTTGTTTATATTGCCGGAATCGGTGAACGACGATGAATATGAGCCGCCGACGGATATTTGGGCCTTGGGATGTGCCATCGTGGAGATGGTGACCGAAAAACCCGCGTGGGGTGTTAGCAACGGTTCCAATATTTGGTCATTGATGATTCGGATTGGAGTGGGAGAAGATATGCCAAAGATTCCAGAAGAATTGTCGGAAGAGGCGAAAGACTTTTTGGAGAAGTGCTTTGATAAGGATCCCAAAAACAGGTGGAGCACTGAGATGCTTCTGAAGCACCCTTTCATCAAAGTTGACTCATTTTCGTTCGAGAATGTTCATCAAACGTTATCATCACCGTCGTCGAAGACCCACTTCGATTTTCCTGACTGGGCGTCCACCGTAATGGCTTCGCTCCCGTCCTCCATGGATTCCGATGAGCACTTTGGGTGGTCGAGTTCTCCGGAGAGTCGTCTCCGGCAGCTTATCACCGATAAGACACCAGAGAATTGGTCAGAATTGGATGGCTGGATCGGCGTTAGGTGA 666 0.5045 MALSFRGSLTDVKLQNILVFDGEVKIADFGLTKEKGEKQGKCEFRGTSLFILPESVNDDEYEPPTDIWALGCAIVEMVTEKPAWGVSNGSNIWSLMIRIGVGEDMPKIPEELSEEAKDFLEKCFDKDPKNRWSTEMLLKHPFIKVDSFSFENVHQTLSSPSSKTHFDFPDWASTVMASLPSSMDSDEHFGWSSSPESRLRQLITDKTPENWSELDGWIGVR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00617 221 SUPERFAMILY Protein kinase-like (PK-like) 11 193 IPR011009 -
Vian5g00617 221 SMART serkin_6 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00617 221 Gene3D Transferase(Phosphotransferase) domain 1 9 178 - -
Vian5g00617 221 ProSiteProfiles Protein kinase domain profile. 1 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00617 221 Pfam Protein kinase domain 11 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00617 221 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 11 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00617 Vian-Chr5 22174270 22183740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00617 11 221 MAP Kinase Kinase Kinase AT5G67080 46.875 1.14e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian5g00617 Pkinase 6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00617 - - var:108339284 449.514