Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00616 ATGGCTTGCAACAAAAATCAAGGGAGCTCTTCATCACACACCAATAATTTTGATGTGTTTGTTAGCTTTAGAGGCGCAGATACTCGTAACGGTTTCACAAATCACCTTTTTGCAGCTCTTCAAAGAAAAGGAGTTGTTGCTTTCACAGATGACCAAACAATCCAGAAAGGGGACTTTTTGGAGTCTGAACTCTTGCTCGCAATTGAAGGATCACGCGTTTTCATTGTTGTCTTCTCAAAGGACTATGCATCATCCACATGGTGCATGAAAGAGCTTACGAAGATCGTCGATTGGGTTGAAGTAACAGGTCGAAGTTTGCTCCCTATTTTCTATGATGTCACTCCTTCTGAGGTCCGAAAACAGAGTGGAGAGTTTGCAAAAGCTTTTGCTGAACACGAAGAAAGGTTCAAAGATGACTTGGAAATGGTAAAAGAATGGAGGGCAGCTCTCAAAACAAGCTGCGATCGTTGTGGGTGGGATGTGCAAAATAAGCAACAATATGAAGAAATTGAAAACGTTGTTGAAGAGGTAATCAACATATTGGGTCGTGATCAAATTTGGAATTTTGGCGATGATTTAGTTGACATGCATTCTCGTGTTAAAAAATTGGAAGAACTTCTAGATCTGAGTGCTAATGATATTGTTCACCTTGTGGGAATTGTTGGAATGGGTGGAATAGGAAAGACCACACTTGCAACTGCATTGTTCAATAAAATCTCTCCTCAATTTAATGCTTGTTGTTACCATGATGATTTAAGCAAAATTTATTGTAATTTTGGAGCAGCAAGTGCACAAAAACAACTTCTTTGTCAAGCTCTAAATCAAGGAAATATCGAGATACACAATGCTTCCCATGGAACTATGTTGATAAGAACTAGATTATGTCACTTAAAAGCGCTTGTTGTTGTTGATAATGTTGATCAAGTTGAACAATTAAAGAAATTGGGTTTGCAATCTGAATATCTGGGTGCAGGGAGCAGAATCATCATAATTTCTAGAAATTGTCGTATCTTGCAAAATTACGGAGTAAATAAAGTTTACGAAGTTGAAGTCTTGGACAAAACTCAATCTCTTCAATTACTTCTCAATAAAGCTTTTAGATCGAATGATATTGGGAAAGAACATAAAGGGTTGACATTAGATATACTGAAGTATGTGAATGGTCTTCCATTAGCTATTGAAGTATTGGGCTCATTTTTACTTGATCGAGATGTTTGTGAATGGAGAAGTGCATTGACTAGAATGGAAGAAAATCCAAGCAAAGATATCATGGATGTCTTGCGAATAAGTTATGATGGATTGGAGAATATAGAGAAAGAAATATTTCTAGATATTGCTTGTTTCTTCTCCAATAATAATTCCTACTCATGGGAGCCAACAGTGAAGAAATTTTTGGACTATCGACAATTTTTTCCTGACATTGGTATGAAAGTTCTGATTGAGAAGTCACTTATAAGTCGTCAAAATGGAGATATTAAAATGCATGGCTTGTTGAAAGAGTTGGGTAAGAGTATTGTCCGAGAAAAAGCACCCAAAGAACCAAGGAAGTGGAGCAGGTTATGGAACTACAAGGATCTCCAAAAAGTCATGAAAATAAATAAGGAAGCCGAAAATGTTGAAGCTATATTTATTGAACAACATGAAAAAGAGTTTCTACAAGGAAGAATAAGAGTGGATTCTTTATCAAAAATGGATCACCTTGAGTTGCTCATTCTGAAGAATGTGAACTGTTATGGAACTCTCAATTTCATTTCTAATGAACTGAGATATCTATTTTGGAATCACTTTCCTTGGTTGTCTTTGCCATCAACTTTCTTTCTAGATCAACTTGTAGAATTGATCCTACCTCATAGCAATATCAAGCAACTATGGGAAGGAAAAAAGTGTCTGCCTAATTTGAGAAATTTGGATCTGAGACACTCCAAAAATCTTATTGAGGTGCCAGACTTAAGTGAGGTTCCACGTCTGACGGATCTTAATCTCCAAGGATGTATACAACTAGTCCACATTCATCCATCCATTGGTATTCTAAGAGACCTTCGTCGTTTGAATTTGATGAATTGTAAAAATCTTGTCCTTAATCTGAATATCCTTTTTGGGATCAGTTCACTCAAGACCTTAAATATCTCCGGCTGTTCAAAATTACTTAATGGTAAGATGTTAATGGTCCCAAGTGACACAAAACATTTGGAGAAAGTTGATAAAAATACAAATATCATCCAATTGCCAACATCCTCTGTATACAAACTTCTAATGTTGTCTTTCCATTTTTTCTACCCTCCAAAACCTCAAGATTCACTTGGTTTGTTATCGTCTTCTTTGTCTTTCTTTGTCCCGTGTTTATGTGATCTTGACATAAGCTTCTGTAATCTACTTCAAATCCCAGATGAAATTGGGAACTTATGTTCTTTAAAAAAATTAAATTTGGGGGGAAACAAATTTGTGACACTACCAAGCACCATCAAGCAACTTTCCAAGCTTCGATGTTTGATTTTGACACACTTCAGGAGCTAA 2514 0.3632 MACNKNQGSSSSHTNNFDVFVSFRGADTRNGFTNHLFAALQRKGVVAFTDDQTIQKGDFLESELLLAIEGSRVFIVVFSKDYASSTWCMKELTKIVDWVEVTGRSLLPIFYDVTPSEVRKQSGEFAKAFAEHEERFKDDLEMVKEWRAALKTSCDRCGWDVQNKQQYEEIENVVEEVINILGRDQIWNFGDDLVDMHSRVKKLEELLDLSANDIVHLVGIVGMGGIGKTTLATALFNKISPQFNACCYHDDLSKIYCNFGAASAQKQLLCQALNQGNIEIHNASHGTMLIRTRLCHLKALVVVDNVDQVEQLKKLGLQSEYLGAGSRIIIISRNCRILQNYGVNKVYEVEVLDKTQSLQLLLNKAFRSNDIGKEHKGLTLDILKYVNGLPLAIEVLGSFLLDRDVCEWRSALTRMEENPSKDIMDVLRISYDGLENIEKEIFLDIACFFSNNNSYSWEPTVKKFLDYRQFFPDIGMKVLIEKSLISRQNGDIKMHGLLKELGKSIVREKAPKEPRKWSRLWNYKDLQKVMKINKEAENVEAIFIEQHEKEFLQGRIRVDSLSKMDHLELLILKNVNCYGTLNFISNELRYLFWNHFPWLSLPSTFFLDQLVELILPHSNIKQLWEGKKCLPNLRNLDLRHSKNLIEVPDLSEVPRLTDLNLQGCIQLVHIHPSIGILRDLRRLNLMNCKNLVLNLNILFGISSLKTLNISGCSKLLNGKMLMVPSDTKHLEKVDKNTNIIQLPTSSVYKLLMLSFHFFYPPKPQDSLGLLSSSLSFFVPCLCDLDISFCNLLQIPDEIGNLCSLKKLNLGGNKFVTLPSTIKQLSKLRCLILTHFRS 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00616 837 Pfam NB-ARC domain 200 423 IPR002182 GO:0043531
Vian5g00616 837 Gene3D - 10 183 IPR035897 -
Vian5g00616 837 Gene3D Ribonuclease Inhibitor 552 740 IPR032675 -
Vian5g00616 837 SUPERFAMILY "Winged helix" DNA-binding domain 422 530 IPR036390 -
Vian5g00616 837 Gene3D - 184 350 IPR027417 -
Vian5g00616 837 PRINTS Disease resistance protein signature 699 715 - -
Vian5g00616 837 PRINTS Disease resistance protein signature 293 307 - -
Vian5g00616 837 PRINTS Disease resistance protein signature 217 232 - -
Vian5g00616 837 PRINTS Disease resistance protein signature 386 400 - -
Vian5g00616 837 Gene3D Ribonuclease Inhibitor 764 836 IPR032675 -
Vian5g00616 837 Gene3D - 351 435 IPR042197 -
Vian5g00616 837 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Vian5g00616 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 445 IPR027417 -
Vian5g00616 837 SMART till_3 16 156 IPR000157 GO:0007165
Vian5g00616 837 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 716 IPR044974 GO:0006952
Vian5g00616 837 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Vian5g00616 837 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Vian5g00616 837 SUPERFAMILY L domain-like 558 833 - -
Vian5g00616 837 ProSiteProfiles TIR domain profile. 15 177 IPR000157 GO:0007165
Vian5g00616 837 Pfam TIR domain 16 174 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00616 Vian-Chr5 22111144 22114058 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00616 12 836 WRKY Transcription Factor Family AT4G12020 29.085 1.31e-77 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00616 - - vra:106780706 1458.35