Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00602 ATGGGGAACAATAGTTTGTTTCGTTATGCAGATGGAGTGGATAGATTGCTGATGTTCTTTGGGACCTTGGGAAGCCTTGGAGATGGACTACAGACCCCTCTAATGATGTACATTCTTAGTGATGTGATCAACGCCTATGGAGACAAAAATAGTCACTTGCAAATGCATGATGTGAACAAGTATGCGTTGAGGCTTTTTTGTGCTGCACTTGGAGTTGGTCTTTCAGCTTTTATTGAAGGAATATGTTGGACAAGAACTGCTGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGACAAGATGTCGGTTTCTTTGACACACAGACTGGTGGCTCTTCAACAACCTACCAAGTTGTTTCACTCATTTCCTCAGATGCCAATACAATCCAAGTTGTCTTGTGTGAGAAGGTTTTTCTGCAGTTATGCATTTCTAGTTCTTGTTTGGAATTCAGTGATGATCATGATCATAGATCTCCAAAAATACCTGATTGCCTGGCTTATATGTCAACATTCCTATTTTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTACATTGGCAGCCATACCACTCTCTGTCATGTTCATTGTTCCAGCACTTGTATTTGGGAAGATCATGTTGGACCTCGCAATGAAAATGATTGAGTCTTATGGGGTTGCCGGTGGCATAGCAGAGCAGGCAATATCTTCGATAAGAACTGTTTATTCATATGTTGGGGAGAATCAAACACTAAACAGATTTAGCAGCGCACTTCAGAAAACACTGGAATTTGGAACAAAGCAAGGTTTTGCAAAAGGGTTAATGTTGGGAAGTATGGGGGTCATTTATATAAGTTGGGGCTTTCAAGCTTGGGTTGGAACAATTCTGATCACTAAAATGGGAGAACAAGGTGGCCATGTGTTTGTAGCTGGCTTCAATGTTCTCATGGGAGGCTTGAGCATTTTAAGTGCCCTTCCAAATTTAACTGCCCTCACAGAGGCAACTGCTGCAGTCACACGTCTCTTAGAAATGATTGATCGGGTGCCAACCATAGATTCTGAAGATAAGAAAGGAAAGGCCTTGTCATATGTGAGGGGAGAGATTGAATTTCAAGACATCCACTTTTGTTACCCATCTAGGCCAGACACACCAGTCTTGCAAGGATTCAATCTCACTGTTCCAGCAGGCAAGAAGGTAGGCCTTGTGGGAGGTAGTGGTTCAGGTAAATCCACTATCATAGCCTTGCTTGAAAGGTTTTATGACCCTATTGAAGGAGTAATACTCTTGGATGGTCACAAGACTAACAGGCTTCAACTGAAGTGGTTGAGATCCCAATTTGGTCTTGTAAATCAAGAACCTGTTCTCTTTGCCACTTCCATAAAAGAGAATATATTGTTTGGAAAGGAAGGAGCTTCAATGGAAAGTGTGATAACTGCGGCTAAAGCAGCTAATGCACATGATTTCATTGTCAAGTTGCCAGATGGATATGAAACTCAAGTTGGGCAGTTTGGGTTTCAGTTGTCTGGTGGGCAGAAGCAACGTGTTGCCATAGCAAGAGCCTTGCTAAGGGATCCAAAGGTTCTCTTGCTTGATGAAGCTACCAGTGCATTGGATGCTCAATCTGAAAGAGTGGTGCAAGCAGCCATTGATCAAGCTTCAAAAGGAAGGACAACAATTATCATCGCTCACCGCTTGTCCACAATTCAATCTGCTCACATGATTGCAGTCCTTCAAGCAGGGAGAGTCATTGAAACAGGTACTCATAATGAGCTCATGGAATTGACTGATGGTGAGTATGCTCACATGGTAGAGTTGCAGCAAGTAACATCCCAAACTGATGAATTCAAACCTTCCAATCTTCAAATAGAAGGAAAGAACTCTCACAGGATGAGCATTCAACAGAGTCCAGCTGTAAGTTTCAGATCAAGCACTGTAGGCAGTCCAATGTTGAATCCCTTCAGTCAGGGGTTTTCCATGGGAACACCATACTCATATTCTATTCAATATGATCCTGATGATGATAGTTATGAGGATAACATGAAACGAGCTAATCATCCAGCTCCTTCACAGTGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGGAAGAGCAATGCTAGGAATCTTAGGAGCAATAGGGTCAGGAGCAGTACAGCCTGTGAATGCATACTGTGTAGGAACACTTATATCAGTTTATTTTGAAACTGATAGCTCTAAGATGAAGTCTAAAGCTAAAGAACTGGCCCTCATTTTCTTAGGAATTGGTGTTTTCAACTTCTTCACTAGTATTCTTCAGCACTATAACTTTGCAGTTATGGGAGAAAGGTTGACTAAAAGAATAAGAGAGAAGATGCTAGAGAAGTTGATGACTTTTGAGATAGGGTGGTTTGATCATGAAGAGAACACAAGTGCGTCCATTTGTGCAAGATTATCCTCTGAAGCCAACTTGGTCCGTTCCCTTGTTGGAGATCGACTGTGTTTGTTGGCTCAAGCAGTTTTTGGGTCTGTCTTCGCCTACACTCTAGGACTTGCGCTCACATGGAGGCTTTCCCTTGTGATGATTGCAGTGCAGCCATTAGTCATTGGAAGCTTTTACTCAAGAAGTGTCTTGATGAAGAGTATGGCCGAGAAAGCTCGTAAGGCACAAAGGGAAGGAAGTCAACTTGCAAGTGAAGCTGTTGTAAACCATAGAACCATAACTGCCTTCAGCTCTCAGAAAAGAATGTTGGCACTTTTCAAATCCACAATGGTAGGGCCTAAAAAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCTCAGTTTTTCAACACTTCATCAACAGCACTGGCTTACTGGTATGGTGGGAGGCTCTTGATAGATCATAAAATAGACCCAAAGGAACTCTTCCAAGCATTTTTAATATTACTCTTCACTGCTTACATAATTGCAGATGCTGGAAGCATGACTTCTGACTTGTCCAAAGGAAGCAGCGCAGTTGGATCAGTTTTTGCAATGCTAGACAGGAAAACTGAGATTGACCCTGAGACTTCATGGGGTGGTGAGAAAAGGAGGAAAATAAGGGGTAGAGTTGACCTAAAAAATGTTTTCTTTGCATATCCAACTAGACCTGATCAAATGGTTTTCAAGGGCTTATCTCTTAAAATTGAAGCTGGGAAAACAGTGGCTCTAGTAGGGCACAGTGGTTGTGGTAAATCAACAGTTATTGGTCTTATTGAAAGGTTTTATGATCCTGCAAAGGGAACGGTGTGCATAGATGAGCAAGACATCAAGTCCTATAATTTAAGAATGCTGAGGTCACAAATTGCATTAGTGAGTCAAGAGCCAGCCCTTTTTTCTGGCACCATACGAGAAAACATTGCCTATGGGAAAGAAAACACAACAGAATCTGAGATAAGAAGGGCAGCATCTCTGGCTAATGCTCATGAATTCATAAGTGGAATGAATGATGGGTATGAGACATACTGTGGTGAAAGAGGAGTTCAGCTATCAGGAGGTCAGAAGCAAAGAATAGCATTAGCTAGGGCGATTCTGAAGAATCCTGCAATACTTCTTCTAGATGAGGCTACAAGTGCACTTGATAGTGTGTCAGAGATCTTGGTCCAAGAAGCACTAGAGAAGATAATGGTTGGAAGAACATGCATAGCAGTGGCTCACAGGCTCTCTACAATACAGAAATCCAACTACATTGCTGTGATTAAGAATGGGAAGGTTGTGGAACAAGGTTCACATAACGAATTGATTTCACTCGGACGCGATGGTGCATACAATTCTCTTGTTAAACTGCAAAGTGGTAGCTCTCCTAGATAA 3819 0.4211 MGNNSLFRYADGVDRLLMFFGTLGSLGDGLQTPLMMYILSDVINAYGDKNSHLQMHDVNKYALRLFCAALGVGLSAFIEGICWTRTAERQASRMRMEYLKSVLRQDVGFFDTQTGGSSTTYQVVSLISSDANTIQVVLCEKVFLQLCISSSCLEFSDDHDHRSPKIPDCLAYMSTFLFCHIFAFVLSWRLTLAAIPLSVMFIVPALVFGKIMLDLAMKMIESYGVAGGIAEQAISSIRTVYSYVGENQTLNRFSSALQKTLEFGTKQGFAKGLMLGSMGVIYISWGFQAWVGTILITKMGEQGGHVFVAGFNVLMGGLSILSALPNLTALTEATAAVTRLLEMIDRVPTIDSEDKKGKALSYVRGEIEFQDIHFCYPSRPDTPVLQGFNLTVPAGKKVGLVGGSGSGKSTIIALLERFYDPIEGVILLDGHKTNRLQLKWLRSQFGLVNQEPVLFATSIKENILFGKEGASMESVITAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRVAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIQSAHMIAVLQAGRVIETGTHNELMELTDGEYAHMVELQQVTSQTDEFKPSNLQIEGKNSHRMSIQQSPAVSFRSSTVGSPMLNPFSQGFSMGTPYSYSIQYDPDDDSYEDNMKRANHPAPSQWRLLKMNAPEWGRAMLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSKMKSKAKELALIFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKMLEKLMTFEIGWFDHEENTSASICARLSSEANLVRSLVGDRLCLLAQAVFGSVFAYTLGLALTWRLSLVMIAVQPLVIGSFYSRSVLMKSMAEKARKAQREGSQLASEAVVNHRTITAFSSQKRMLALFKSTMVGPKKESIRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIDHKIDPKELFQAFLILLFTAYIIADAGSMTSDLSKGSSAVGSVFAMLDRKTEIDPETSWGGEKRRKIRGRVDLKNVFFAYPTRPDQMVFKGLSLKIEAGKTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKSYNLRMLRSQIALVSQEPALFSGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNDGYETYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIAVAHRLSTIQKSNYIAVIKNGKVVEQGSHNELISLGRDGAYNSLVKLQSGSSPR 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00602 1272 Gene3D ABC transporter type 1, transmembrane domain 680 1005 IPR036640 GO:0005524|GO:0016020
Vian5g00602 1272 Gene3D - 1017 1270 IPR027417 -
Vian5g00602 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1266 IPR027417 -
Vian5g00602 1272 FunFam Putative ABC transporter B family member 8 667 1014 - -
Vian5g00602 1272 PANTHER ABC TRANSPORTER B FAMILY 5 761 IPR039421 -
Vian5g00602 1272 Pfam ABC transporter transmembrane region 164 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian5g00602 1272 Pfam ABC transporter transmembrane region 705 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian5g00602 1272 Pfam ABC transporter transmembrane region 18 144 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian5g00602 1272 Gene3D ABC transporter type 1, transmembrane domain 163 621 IPR036640 GO:0005524|GO:0016020
Vian5g00602 1272 SMART AAA_5 1054 1240 IPR003593 GO:0016887
Vian5g00602 1272 SMART AAA_5 394 586 IPR003593 GO:0016887
Vian5g00602 1272 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Vian5g00602 1272 Gene3D ABC transporter type 1, transmembrane domain 5 152 IPR036640 GO:0005524|GO:0016020
Vian5g00602 1272 Pfam ABC transporter 1046 1194 IPR003439 GO:0005524
Vian5g00602 1272 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524|GO:0016887
Vian5g00602 1272 CDD ABC_6TM_Pgp_ABCB1_D2_like 693 1009 - -
Vian5g00602 1272 FunFam ABC transporter B family member 4 357 613 - -
Vian5g00602 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 606 IPR027417 -
Vian5g00602 1272 CDD ABC_MTABC3_MDL1_MDL2 1027 1266 - -
Vian5g00602 1272 SUPERFAMILY ABC transporter transmembrane region 6 142 IPR036640 GO:0005524|GO:0016020
Vian5g00602 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian5g00602 1272 SUPERFAMILY ABC transporter transmembrane region 166 351 IPR036640 GO:0005524|GO:0016020
Vian5g00602 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian5g00602 1272 SUPERFAMILY ABC transporter transmembrane region 690 1010 IPR036640 GO:0005524|GO:0016020
Vian5g00602 1272 Pfam ABC transporter 385 534 IPR003439 GO:0005524
Vian5g00602 1272 Gene3D - 357 606 IPR027417 -
Vian5g00602 1272 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Vian5g00602 1272 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 340 - -
Vian5g00602 1272 FunFam ABC transporter B family member 4 1017 1270 - -
Vian5g00602 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1263 IPR003439 GO:0005524
Vian5g00602 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00602 Vian-Chr5 21840344 21846892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00602 6 1272 Calmodulin-binding Proteins AT2G36910 42.735 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00602 K05658 - gmx:100788127 2264.96