Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00598 ATGCCTTCCAAGGCCATCATGAAATGCAGCTCTTCTTCATCATCTCAAGTCACAAGAACATACGATGTGTTTGTGAGTTTCCGAGGTGAAGACACTCGAAACAACTTCACTGATTTTCTCTTCGAAGCTCTTCGTAGAAAAGGCTTTCATGCCTTCAAAGACGATGCTGATCTCAAGAAAGGTGAATCCATAGCACCGGAACTGCAACAGGCAATTGAAGGGTCTCGCATTTTCATCGTGGTGTTCTCTAAGAACTATGCTTCCTCCACTTGGTGCTTGCGTGAACTTGCCCACATTTGCTATTTGGTTGAAGCACCAGGAACACATATTCTACCTATTTTTTATGATGTGGATCCGTCAGATGTGCGAAAACAAAGTGGATATTTTGAGAAACCCTTTGTCGAACTCGAAGAAAGATTTAGAGAAGATAATGAAAGGATGGATGAAGTGCAGAGATGGAGAGAAGCTCTCACCCAAGTGGCCAATCTCAGTGGCTGGGACATCAGAAATAAGCCACAATATGCAGGGATTGAAGAAATTGTTCAAAGGGTGACAGATATATTGGGTCATAAATTTTCAAGTCTTCCAAATGATAATCTAGTTGGGATGGAATTTCGTGTCGAGGAATTGGCAAAACTCTTATATTCGGAGTCAAGTAATGATGTTAGAGTTTTTGGAATCACTGGAATGGATGGAATAGGAAAGACAACTCTTGTTCGTGCTTTATATGAAGGAATCTCTCATCAATATGATTTTACTTGTTATATTGATGATGTGAACCAGATTTATGGAGATTCTAGTACATTAGGTGTACAAAAGCAATTGCTTTCTCATTCTCTAAATGAAAAATGTGAAGAGATTTGCAATGTTTCTCAGGGAACTTATTTGATATGGAAAAGGCTACAACGTAAAAAGGCACTTATAGTTCTTGATAATGTTGATAAAGTTGAACAGCTAAAGATTTTTACAGGGAATCGAGACACTATGTTACGTGATTGCTTAGGTAGAGGGAGCATAATCATCATAATTTCCAGAGATGAACAAATATTGAGGATACATGGAGTAGATGAGGTTCACCAAGTTCAACCACTGGAGAACAAAGAGGCCGTTCAGTTATTTTGTAGACATGCTTTCAAAGCTAATGTTATTATGAATGGTTATGAAAAGATGGCAAATGAGGTACTATGGCATGCTCAGGGTCATCCTTTTGCAATTGAAATTTTGGGTTCATCGTTATTTGGTCTAAGTGTGTCACAATGGAGAAGTGCATTAGCTATGCTAAGAGAAAACAAAAGTAAAAAGATTATGGATTTGCTTAGAATAAGTTTTGAAGCGTTGGATTATACAAACAAGCAAATATTTCTAGACATATCTTGCTTTCTCCATGGCTATGAAGTGGAACATGTAGTAGAAATTCTAAATTTTCGTGGATTTTATCCCGAATATGGCTTGCAAGTTCTGATAAATAAATCACTCTTGATCGTTGAGGATGGGAGAATTAAAATGCATCGCTTGTTGATGGATTTGGGGCAGTCTATTGTTCGTGAAGTATCACCTAAAGAACCAAGAAATTGGAGCAGAGTGTGGAGCTATAAGGATCTCCAAAAAATACTGTCAAATAACAAGCCAGCAGAAAATCTGGAATCTGTAGTTTGTGAGTTCGCACTCTTTAAAACAACCTTGAGCGCAGATGGGTTTTCAAACATGAGGCATCTTAAGTTGCTCAAGTTGAATTATGTGGAATTTTCCGGAAGCCTGGACTATCTTCCTAGTGAATTAGGATATCTATGTTGGCATGGATATCCATTTAAGTCTTTGCCACCTCGTTTTCTACCGTACAAGCTTGTTTCGTTGTCCCTGGCTAATAGCAAAATCAAACAACTATGGGAAGATACAAAGCCTTTACACAATTTGAAGCGTTTGGATCTCTCTTCATCAGAAGACCTAATCAAGGTGCCAGATTTAGGGGAGGCCATAAATCTTGAGTGGCTATCTCTAAAAAGTTGTACAAAAATAAGGGAGATCCATCCATCCATTGGTCTTCTAAGAAAACTTTCTTATGTGACTTTGGAAGGCTGCAAAAGTCTTATAAAGTTGCCACATTTTGAGGAGACCCAAAATCTTGAAATACTAGATCTTGAGAGATGTATAAAATTGGAGAAGATCCATCCATCCATTGGTTTTATAAGAAAACTGAAATTTTTGAACTTGAAAAACTGCGAAAATCTTACCATGTTACCACATTTTAGAGAGGACCTAAATCTTGAAATTCTAAATCTCGAAGGATGTAGGAAGCTCGGGCAGATCAATCCCTCCATTCATCATCTAAAAAAGCTTACTGTTTTGAATTTGAAAGGCTGCAAAAGGCTAGTAAGCTTGCCCAACAGCATATTATGCCTCAATTCTCTCAGTTATCTGAATCTCTCGGCCTGTTCAAATCTGTCTTATATCCAGTTATTAGAAAAACCAAGGGATGAAGGTCATTCGAAGAGGCCTTGTGTAGGTGAAGCTTCTCTAAGATCTTCCATCATGAAAAGGTGGTTTAAGTCGCCTTTACACTTGTTCAATTCAAGAACCCATAAAGATTCATTTAGCCACTTGTTGCCTTCTCCCAATTTCTCATGCATTCGTGAACTTGATCTAAGTTTCTGCGCTTTACTTCAAATCCCTGATGTTATTGGAAATTTGCATAGCTTAGAAAGGCTAAACTTGAGTGGAAACAGTTTTTGCAAACTACCCAACCTCAAGGAACTTTCCAAACTGTATCGATTAGTCTTAAGGCATTGCAGGCAACTGAAATATTTGCCTGAGCTACCTTCACAAACTTACTTGCCATCAGTAATTTACGAAAGGCCATGGCCAACAACAGAATCTCCAGCATGGGCAAACGCACCACAAAAACCACTTCTACATGTTACAAACTCAGGTTTAGAAGTTTTGAACTGCCCAGAGTTAGTTGAGATTGAAAGGGAACGCTGTACGAGAATGACTGTTTCATGGATGATACAAATACTTCAGGCGCAACGCCGCATAGATCCGTTGTCCATTCCAATGAACCCACTTTTTTCAAGTGTTATACCTGGAAGTGAAATACCAAGGCTGTTCAACCATCTGGAGTATAGCACGTTAACAAGGATTGATGAGTCTCCCTTTGGGCATGACTATGAGGCTGCTGTGTTTTGTGTAATATTCGAAGCTCGGTTCAAAAAGGGGATTGTGTCATCAATTTGTCCTCCGAAAGCAAAAGGAAAGTTTAATGACAGTAAGATTTCAATGGTTTTTGATTCTGATCTAGCCATCGCGGAATATGTTTCAGATTACCTGTGGATATCCTTTTTGATTAAAGAAGAATTCATTCATTATCAGGACGCACCTTTGTATGATGAAATAGTAGACTTAGTCGGGAATGACCATTATGATATAGATGTGAAGAAATGCGGGTATCGTCTGATATATGATCTGGATCTAGAACTATCAAACTTAGCAATGATGCTTGGTGGAAATTCGCCGGCCTTGAAGAACGACCTTTCGGCAATTGAAGATAACAAGTAG 3552 0.386 MPSKAIMKCSSSSSSQVTRTYDVFVSFRGEDTRNNFTDFLFEALRRKGFHAFKDDADLKKGESIAPELQQAIEGSRIFIVVFSKNYASSTWCLRELAHICYLVEAPGTHILPIFYDVDPSDVRKQSGYFEKPFVELEERFREDNERMDEVQRWREALTQVANLSGWDIRNKPQYAGIEEIVQRVTDILGHKFSSLPNDNLVGMEFRVEELAKLLYSESSNDVRVFGITGMDGIGKTTLVRALYEGISHQYDFTCYIDDVNQIYGDSSTLGVQKQLLSHSLNEKCEEICNVSQGTYLIWKRLQRKKALIVLDNVDKVEQLKIFTGNRDTMLRDCLGRGSIIIIISRDEQILRIHGVDEVHQVQPLENKEAVQLFCRHAFKANVIMNGYEKMANEVLWHAQGHPFAIEILGSSLFGLSVSQWRSALAMLRENKSKKIMDLLRISFEALDYTNKQIFLDISCFLHGYEVEHVVEILNFRGFYPEYGLQVLINKSLLIVEDGRIKMHRLLMDLGQSIVREVSPKEPRNWSRVWSYKDLQKILSNNKPAENLESVVCEFALFKTTLSADGFSNMRHLKLLKLNYVEFSGSLDYLPSELGYLCWHGYPFKSLPPRFLPYKLVSLSLANSKIKQLWEDTKPLHNLKRLDLSSSEDLIKVPDLGEAINLEWLSLKSCTKIREIHPSIGLLRKLSYVTLEGCKSLIKLPHFEETQNLEILDLERCIKLEKIHPSIGFIRKLKFLNLKNCENLTMLPHFREDLNLEILNLEGCRKLGQINPSIHHLKKLTVLNLKGCKRLVSLPNSILCLNSLSYLNLSACSNLSYIQLLEKPRDEGHSKRPCVGEASLRSSIMKRWFKSPLHLFNSRTHKDSFSHLLPSPNFSCIRELDLSFCALLQIPDVIGNLHSLERLNLSGNSFCKLPNLKELSKLYRLVLRHCRQLKYLPELPSQTYLPSVIYERPWPTTESPAWANAPQKPLLHVTNSGLEVLNCPELVEIERERCTRMTVSWMIQILQAQRRIDPLSIPMNPLFSSVIPGSEIPRLFNHLEYSTLTRIDESPFGHDYEAAVFCVIFEARFKKGIVSSICPPKAKGKFNDSKISMVFDSDLAIAEYVSDYLWISFLIKEEFIHYQDAPLYDEIVDLVGNDHYDIDVKKCGYRLIYDLDLELSNLAMMLGGNSPALKNDLSAIEDNK 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00598 1183 Gene3D - 192 357 IPR027417 -
Vian5g00598 1183 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 190 - -
Vian5g00598 1183 Gene3D Ribonuclease Inhibitor 842 1006 IPR032675 -
Vian5g00598 1183 Gene3D Ribonuclease Inhibitor 703 826 IPR032675 -
Vian5g00598 1183 ProSiteProfiles TIR domain profile. 19 188 IPR000157 GO:0007165
Vian5g00598 1183 PRINTS Disease resistance protein signature 398 412 - -
Vian5g00598 1183 PRINTS Disease resistance protein signature 300 314 - -
Vian5g00598 1183 PRINTS Disease resistance protein signature 224 239 - -
Vian5g00598 1183 PRINTS Disease resistance protein signature 633 649 - -
Vian5g00598 1183 Pfam TIR domain 21 194 IPR000157 GO:0007165
Vian5g00598 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 457 IPR027417 -
Vian5g00598 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 724 IPR044974 GO:0006952
Vian5g00598 1183 SMART till_3 20 163 IPR000157 GO:0007165
Vian5g00598 1183 Gene3D - 363 447 IPR042197 -
Vian5g00598 1183 Gene3D Ribonuclease Inhibitor 523 702 IPR032675 -
Vian5g00598 1183 SUPERFAMILY L domain-like 501 949 - -
Vian5g00598 1183 Pfam NB-ARC domain 206 433 IPR002182 GO:0043531
Vian5g00598 1183 Gene3D - 18 191 IPR035897 -
Vian5g00598 1183 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 166 IPR035897 -
Vian5g00598 1183 ProSiteProfiles Leucine-rich repeat profile. 898 919 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00598 Vian-Chr5 21715426 21734835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00598 729 902 WRKY Transcription Factor Family AT4G12020 33.846 1.32e-10 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00598 - - vra:106756186 2253.02