Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00593 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTTGATTACGGCTTGATAGATGATATTCCCGTCCCGGATGCCTCCTTCACCGTCCCTTCCTCCGGCTTCACATGGCCTCCTAATGCCTTGAATGCCACTTCCAATGTCGGGGCTGTGTTTAGGAAGCTCTACGGCTCTGACGGTTCACTGGTGGATTCTGATGGTCTCAAAGAGTCTGGCTCAAAGAAGAGGGTTAGATCTGAGACATGTGCTGCTTCTAGCACCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTACGAAAACTGATAAGGCTGCTATCCTGATTGATGCTGTCCGTATGGTGACACACTTACGGGGTGAAGCGCAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTAGGGATGAGAAACAGGTGCTCAAGGCAGAGAAGGAGAAGTTGGAGCAGCAGCTGAAATCTTTGAATGCACAACCCAGTTTCATGCCTCCCCCTGCTGCTATCCCTGCTGCATTTGCGGCGCAAGGCCAAGCCCACGGAAACAAGTTGGTACCTTTTATTAGTTATCCTGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 729 0.4897 MVSRENTNWLFDYGLIDDIPVPDASFTVPSSGFTWPPNALNATSNVGAVFRKLYGSDGSLVDSDGLKESGSKKRVRSETCAASSTKACREKLRRDKLNDKFVELGSILEPGRPTKTDKAAILIDAVRMVTHLRGEAQKLKDSNQGLQEKIKELKAEKNELRDEKQVLKAEKEKLEQQLKSLNAQPSFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00593 242 Pfam Helix-loop-helix DNA-binding domain 84 132 IPR011598 GO:0046983
Vian5g00593 242 Gene3D - 84 162 IPR036638 GO:0046983
Vian5g00593 242 SMART finulus 87 138 IPR011598 GO:0046983
Vian5g00593 242 CDD bHLH_AtILR3_like 86 161 - -
Vian5g00593 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 157 IPR036638 GO:0046983
Vian5g00593 242 Coils Coil 129 184 - -
Vian5g00593 242 FunFam Transcription factor bHLH34 72 130 - -
Vian5g00593 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Vian5g00593 242 PANTHER BHLH TRANSCRIPTION FACTOR 3 242 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00593 Vian-Chr5 21515869 21519232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00593 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.571 5.83e-110 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian5g00593 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00593 - - gmx:100788858 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00593 5 21515869 21519232 Vian5g00593 5 21515869 21519232 ECH
Vian11g00914 11 10595708 10597520 Vian5g00593 5 21515869 21519232 PCT