Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00589 ATGGGAATTCAAAAACATATGGTTAACGTAAAGGCTAGCTTAGGTGTTCTTGTGGTTCTTCTTCTTGTAGCAGCAGTCAGTCCTTTGGAGAAGAAGGAAACAGAAGATGATTTTGTTAGAAAGTTACTTGATCCAGCATCTGGGTTGTTCGATGAACACACGGAAAAAGTCTTATGGAAATATTGCAGGAAAGGTTTATTTCATTTAGTGAAAGATGTTGAGAATCATGATTTGTGTCTTTCATGGGAATTATCTGGCAGCGCCAATATAATCAGCTCAGAGATTCAACCATTAGAACGAGAAGAGACCAAAAAATTTATCAATGCTTACTGTTCTCAATTCAAGGACAACATTCTTCACTGTTTGAGAAAAGATAATCCCCCATTACCTGATTCAGGAAAAGAGGATGATTCCAATATTTGGCATGTCACTTATATGGCACCACTTTTTTCCAGATCCAGTGCTCCTACGAGAAATTTTGGTCGTATTTTGCTCCAGCACATATCAGAACCACCTAGTCCAGGCCCTGCACCTAGTTTAGCACCATCTTCTGAACCCAGTCCAGCACCATCTTCTGAACCCAGTCCAGCACCATCATCTGAACCCAGTCCAGTACCATCACCTCATTCTCCTCCAGTACATAATCTTCCTAGACCACTGCAACCTTCTGCACCAACACCCTTTTTTCCAAAATTGACACCACCAGCAGCTTCAGATATTTCTGCTCCTCCATCTCCGGAAGTTGACAAACAGGAAGATAGTCACAGTAATAAAAAAACAGTTGTTCTTGCAGTAGTTATAACTGCATTGGTGACATTTATAGCTGCAGCACTGCTCTTTTTATGCTGGAGGCGGCATCAGAGGACTGGCCATGTTAGACTAAATGATGATAGGCCTCTTCTCAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCCAGTTTTTCTTTTGTGAATTCAATGAAAGGGGAGAAACCTGGGTTTCAGTCAGCTAGTAATAGTTTAGTAGACAATAAGTATACTGTGCAAGAAAGTCAATCAATAGGAGTTCATAATGCTGCTACAGGGTCACCATTTGAACTGAAACCTCCTCCCGGGAGGATGGGAATCATTCCTTCTGGAATGCCTCCCTTAAAGCCTCCACCAGGAAGGTTAAACCCTCCTCCAGGCAGATTAAACCCGCTTCCTCCTGAGCCACCTTCATTTAGGCCTTTGGATGCTGCAGCTCCTCCAGCATCTACCACTACTGTTGCTGCAGTTCCTCCTCCTGCCCCTCAAAAGCCTGCTAGCATTCCACCTACTCGACCACCTCAACCACCAATGGGTGCCAAACCTAGCCCACCTCCACAAACACTAGCTGGTTCCAGACCAGGTCCTCCTCCACCACCTCCAGCACTAGCTGTTTCCAGACCTGGTCCTCCTCCTCCACCACCCCCGGCACCAGCTGCTATTAAACCTGGTCCTCCTCCACCACCACCACCCCTAGTACCAGGTGGTTCCAAACCTGGTCCTTGGCCACCACCACCACCACCTGTTAATGGCGTAGCTCCTCCTCGACCTCCTCCATTTGGCTCAAAGGTGCCCCAGCCTTTGGCTAGTGGATCAAAAGCTACAGTTGCAAGTGAAGTTGATGCTCCCAAAGCCAAGCTAAAGCCCTTCTTCTGGGATAAGGTTCAAGCAAACCCAGATCAATCAATGGTTTGGAATCAAATCAAATCAGGATCATTCCAATTTAATGAGGAAATGATAGAGACACTTTTTGGCTATAATGCTGTGGATAAGAACAATGGTCAAAGACAGAAAGAGTCTTCCTCTCAAGACCCTTCACCTCAGTTTGTCCAGATTATTGACAAAAAGAAAGCACAAAATTTATTGATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTCGCGATGCGCTTTATGAGGGACATGAGCTACCCCCAGAGTTCCTTCAAACTTTGCTAAAGATGGCACCAACATCAGATGAAGAACTTAAGCTCAGACGTTTTAATGGTGATCTATCTCAACTTGGTCCTGCTGACAGTTTCCTCAAAACCCTGGTTGACATTCCATTTGCATTCAAAAGAATGGAAGCTCTGCTTTTCATGGGCTCATTTAAAGAGGAGCTTGGAACTACTATGGAGTCTTTTTACATTTTGGAGGTTGCTTGTAAGGAACTAAGAAGTAGCCGGCTATTTCTGAAGCTTCTTGAAGCTGTTCTCAAAACTGGAAATCGAATGAATGATGGAACTTTCCGTGGTGGTGCTCAAGCATTTAAACTTGATACACTTCTGAAATTGTCTGATGTAAAAGGAACTGATGGGAAGACTACACTCTTACACTTTGTTGTTCTAGAGATTATCCGTTCTGAGGGCATAAAAGCCGTCAGAAAGTCCAAAGATAGCCAGAGTTTGTCTATTATTAAATCAGATGACCTTCAGGATAGTATTCAAGAAACAGAAGATCACTACCATGAAATTGGCCTTCAGGTGGTTTCACACTTGAGCAGTGAACTTGAGAATGTGAAAAAAGCAGCAGTTCTAGACGCTGACAGTTTAACAGGAACAACTGTTAAACTTGGCGAAGGTCTCGTAAACACGCGAGACTTGATAAATAAAAACATGAAGAATGTGGAGGAAGACAGGGGCTTTTGTGAGACAGTGAAAAGTTTTGTGCAGAATGCTGAGGCTAATGTTAAGAAACTGCTGGAAGAGGAGAAGAAGATCATGGCTTTGGTGAAGAACACTGGTGATTACTTTCATGGGAATGCTGGGAAGAATGAAGGCTTAAGGCTGTTCATAGTAGTACGGGACTTCTTACTAATGCTGGATAAAATATGCAAGGAGTTGATAGACACACAGAAGAAGCAAGCAAAAACGGTAAAACAAGAGAATCCCCGGGGACAGTCTTCCTCTGAAACACGGCCACCACCTGATCTTCGACAGCGGCTCTTCCCAGCAATTGCTGAAAGGAGGATGATTGACATTAGTTCAGATGATGAGAGTCCATAG 3018 0.439 MGIQKHMVNVKASLGVLVVLLLVAAVSPLEKKETEDDFVRKLLDPASGLFDEHTEKVLWKYCRKGLFHLVKDVENHDLCLSWELSGSANIISSEIQPLEREETKKFINAYCSQFKDNILHCLRKDNPPLPDSGKEDDSNIWHVTYMAPLFSRSSAPTRNFGRILLQHISEPPSPGPAPSLAPSSEPSPAPSSEPSPAPSSEPSPVPSPHSPPVHNLPRPLQPSAPTPFFPKLTPPAASDISAPPSPEVDKQEDSHSNKKTVVLAVVITALVTFIAAALLFLCWRRHQRTGHVRLNDDRPLLSLSMSDYSVGPSSFSFVNSMKGEKPGFQSASNSLVDNKYTVQESQSIGVHNAATGSPFELKPPPGRMGIIPSGMPPLKPPPGRLNPPPGRLNPLPPEPPSFRPLDAAAPPASTTTVAAVPPPAPQKPASIPPTRPPQPPMGAKPSPPPQTLAGSRPGPPPPPPALAVSRPGPPPPPPPAPAAIKPGPPPPPPPLVPGGSKPGPWPPPPPPVNGVAPPRPPPFGSKVPQPLASGSKATVASEVDAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQRQKESSSQDPSPQFVQIIDKKKAQNLLILLRALNVTMEEVRDALYEGHELPPEFLQTLLKMAPTSDEELKLRRFNGDLSQLGPADSFLKTLVDIPFAFKRMEALLFMGSFKEELGTTMESFYILEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAVRKSKDSQSLSIIKSDDLQDSIQETEDHYHEIGLQVVSHLSSELENVKKAAVLDADSLTGTTVKLGEGLVNTRDLINKNMKNVEEDRGFCETVKSFVQNAEANVKKLLEEEKKIMALVKNTGDYFHGNAGKNEGLRLFIVVRDFLLMLDKICKELIDTQKKQAKTVKQENPRGQSSSETRPPPDLRQRLFPAIAERRMIDISSDDESP 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00589 1005 MobiDBLite consensus disorder prediction 369 406 - -
Vian5g00589 1005 PANTHER FORMIN-RELATED 244 992 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vian5g00589 1005 SUPERFAMILY Formin homology 2 domain (FH2 domain) 610 973 - -
Vian5g00589 1005 MobiDBLite consensus disorder prediction 167 256 - -
Vian5g00589 1005 MobiDBLite consensus disorder prediction 965 979 - -
Vian5g00589 1005 Coils Coil 887 914 - -
Vian5g00589 1005 Gene3D Formin, FH2 domain 545 977 IPR042201 -
Vian5g00589 1005 MobiDBLite consensus disorder prediction 960 986 - -
Vian5g00589 1005 MobiDBLite consensus disorder prediction 171 241 - -
Vian5g00589 1005 Pfam Formin Homology 2 Domain 542 945 IPR015425 -
Vian5g00589 1005 MobiDBLite consensus disorder prediction 347 539 - -
Vian5g00589 1005 MobiDBLite consensus disorder prediction 416 527 - -
Vian5g00589 1005 ProSiteProfiles Formin homology-2 (FH2) domain profile. 540 971 IPR015425 -
Vian5g00589 1005 SMART it6_source 540 960 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00589 Vian-Chr5 21168591 21174282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00589 496 995 FH2 protein (formin) Gene Family AT5G54650 60.396 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00589 - - ccaj:109810281 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00589 5 21168591 21174282 Vian5g00589 5 21168591 21174282 ECH
Vian11g00919 11 10634136 10637390 Vian5g00589 5 21168591 21174282 PCT