Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00588 ATGGAGAAGGAAGAAAAAAAGAAGATAAAGGGAAGCATTAAGGATAATATGCCAACAGTTTGGTTCTCTCTGAAGAAGTCTTTACACTGCAAATCTGAACCATCTGATGTTCATGACCCCAAAACAAGGAAGCATTTGAGCACAATCTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCCAGGTCCATAGCAAATCTCAAGGATGTAATCCATGGAAGCAAGAGGCACCTTGATAAGCCACCGAGTTGCAGTCCAAGATCCATAGGAAGCAGTGAGTTCCTTAACCCCATAACTCATGAGGTGATTTTAAGCAACTCAAGGTGTGAGCTGAAAATAACTGGGTATGGAGGCTTCCAAGAAGGACTTGGCAGTGGTGGCAGCAATGCTGGTGGAGGTAGTGGTGGTTCAACTTTTGTGGGGACTCTGAGGCCAGGGACTCCTGGCCCTGGAGGGCACCCTACAATGCATTACTTTAATCCTTCTTTTAGGACCTCATCCACCCCTCCAAGGAAATCTCCTTTCCTCTTATCAGATAAAGAAGGGTCTGGTCCTCCTGGGCTTCAACCCAGTACTAGGTTGTCTCTTGAGACAGATTCTAACGGGTCCTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTCAACAAATGGGATGCTGCTGAAGCTCATCATCTGTCTAAGCATGCTGTGACTGAACTCGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTGAAGTCTGAAAACCAGTGTGGTAGAATTGAGCGAGTTTTGAAAGTGCACAACATGCAAAAGACTCTTGCAAGATTTGAAGAGTACAGGGAGATGGTGAAGATCAAAGCCAGCAAACTCCAGAAGAAGCATCCAAGATGTCTAGCTGATGGAAATGAACTTTTGAGGTTCTATGGCACTACTGTTGCATGCTCTCTAGGCCTTAATGGTTCTTCTAGTCTCTGCCTATCAGAAAAGTGCTGTGTTTGCAGAATCATAAGGAATGGCTTTTCAGCCAAGAAGGAGCTCAAGGGTGGGATTGGAGTCTTCACAACATCAACAAGTGGAAGAGCTTTTGAGTCCATAGAGATTTTTGGTGATGAACCATCACTGAGAAAAGCACTAATAGTGTGCAGAGTAATTGCTGGCAGGGTTCATAGACCACTAGAAAACATTCAGGAAATGGCAGCACAAACAGGATTTGATTCATTGGCTGGGAAAGTTGGTTTATATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATCTGCAAACCTTGA 1320 0.4447 MEKEEKKKIKGSIKDNMPTVWFSLKKSLHCKSEPSDVHDPKTRKHLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGLGSGGSNAGGGSGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSDKEGSGPPGLQPSTRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIFGDEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00588 439 Gene3D - 219 438 - -
Vian5g00588 439 MobiDBLite consensus disorder prediction 158 172 - -
Vian5g00588 439 FunFam C2H2-like zinc finger protein 229 438 - -
Vian5g00588 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 20 437 - -
Vian5g00588 439 MobiDBLite consensus disorder prediction 126 200 - -
Vian5g00588 439 SUPERFAMILY ADP-ribosylation 230 438 - -
Vian5g00588 439 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00588 Vian-Chr5 21131678 21133575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00588 17 439 C2H2 Transcription Factor Family AT5G54630 68.467 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian5g00588 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00588 - - gmx:100787790 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00588 5 21131678 21133575 Vian5g00588 5 21131678 21133575 ECH