Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00581 ATGGGTGGCATAGGAAAGACAACTCTTGTTCGGGCTTTATATGAAAGAATTTGTCATCAATATAATTATCGTTGTTTTATTGATGATGTAAGCCAAATATATCGAGATTCTAATTCGTTAGGCATACAAAAGCATTTAATTTCTCAGTGTCTGAATGAGAAAAATCTAGAGATTTGCAATGTTATTGAGGGAACATGTTTGGTGCGGTCCAGACTGAACAATGCTAGGGCACTTATAGTTCTTGACAACGTTGATCAAGTTCAACAACTGAGGATATTTAGTGGAAACAGAGTCAATTTGTTGCGAGAGTGCTTAGGTGGAGGAACCAGAATCATCATAGTTTCTAGGGATCAACAAATATTGAAGATCCATGGAGTGGATGATATTTATCAAGTTCAACCGTTGAATTGGAAAGATGCTATCCAACTATTTTATAGAAATGCTTTCAAAGGTAATTATATTTTGAGCGATTATGAAAAGTTGGCACCTGAGATACTATCACATGTTGAAGGCCATCCCTTAGCAATTGAAGTAATTGGATCATCTTTGGTTGGCCGAAGTTTGTCACAATGGAAAAGTGTATTGGCTGCGCTAAAAGAAAATAAAAGCAAAAATATTATGGATATTTTGCGCATAAGTTATGTTCAACTGGATGAAAAAGACCAACAAACATTTTTGGATATTGCTTGCTTCTTCAATTCTTATTATAAAGATGTGAAGGAAATTCTAGATTTCCGTGGATTTCATCCTGAAGATAGCATACAAGTGCTCAAAGATAAATCACTCATTACCAAAGATCCCTATGGATTCATACATATGCATAGCTTGCTAGTGGATTTGGGCAGGTGTATTGTTAGGGAAGAATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACTCAAAGATCTCCATGATGCTATGTCAGAGAACGAGGCAACTCGAAACCTTGAAGCAATAGTTGTTAAATATAACTGGGAGTGGGATGATGCTGAAATCCCAGATGAAACCATCAAGGCAGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTTATGTTGGGGACTTGGAGTTTTCGGGAAGTCTCAGTCATCTTTCGAATGAACTAGGATATCTTATTTGGAAGAGATATCCGTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTGGTTGAGTTAATCCTGAGTGGGGACAGTATTCAACGACTGTGGGAAGGCACAAAGCCGTTACCCAATTTGAAGCGTTTGGATCTCTCTTTTTGCAAAAGTTTAGTTGAGATGCCCGATGTAGCAGAGGCCCTAAATCTTGAAAGGATAAATCTTGAAGGATGCATACAGCTCGAAAAACTCAATCCATGGATTGAGAGTCTGAGAAAGCTTGTTCTTTTGAATTTGAGAAACTGCATAAAACTAGTAATCTTACCCAATACTATATTGGGCCTGAATTCTCTTAAATATCTGGATGTCCGTGGTTGTTCAATAGATAGTAAATGCTTACTAGATGAGGCAAGGAACGCAGAGCACTTGATCAGCTGTTTGTCGCCCTCCTTTCTTTTCCCTTGTTTGCGTGAACTCGATCTAAGCTTCTGTAACTTAGTTAAAATTCCTGAGGACATTGGAAAGTTACATTGCTTAGAAATACTAAGTTTAGAGGGAAACAATTTTGTTGAATTGCCTAACCTCAAGGACCTTTTCAGACTGTATTTTTTAAACTTAGGGCATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACAAACTGTCCTGCCCTCAGAACCTTTCATACTGCCGAGATTACCATCTTCAAAATTTGATTCACTTGATTTTTGGAATGACGATGAGGTAAGTGATTATCAAAGTGCAGGATTAATCATTTTCAGCTGCCCAGGATTAGTTGAGATTGAACAGTGCAGGAGAAAGAGTTTTTCATGGACAATACAAATTCTTAAGGCGACCTACTACTGGCCATTCTTTGGAAGTATTATGCCTGGAAGTCAAATACCGAGTTGGTTCAACAATGAGGGTGTGAAGGTGGAGAAAGAATTTCTAACCATTGGTCCACCTCCCGTTCCGCATGACAATAATTTGCTTGGTGTTTTGTATTGTGTAATATTTCGTCTAGACAATGAAACCGAAGTGAAATATTCAAGAACAACAAATTTTCGAAACAAACAAATTCCAATGGATTTTAGAAGAGATCTAGTCATTGACCAGTCAGATCACATGTTGATACAGTATATCGATGTTTCTATGCGGCCCGGATTTGGTATAAATGGTTTTCAGGTCCATCACAAATGGAGGTCGAATTTCGAAATGTTGGGTTACGAGAATGTTGTTGCGGCGGATGTGAAGAAATATAAGTATCGCTGGGTAAATGAACAAGACTTTGATTACTCATTGCCCAGATTTGACAGCTCGGAAGCGCAAGTTTTCCTTATTTGA 2454 0.381 MGGIGKTTLVRALYERICHQYNYRCFIDDVSQIYRDSNSLGIQKHLISQCLNEKNLEICNVIEGTCLVRSRLNNARALIVLDNVDQVQQLRIFSGNRVNLLRECLGGGTRIIIVSRDQQILKIHGVDDIYQVQPLNWKDAIQLFYRNAFKGNYILSDYEKLAPEILSHVEGHPLAIEVIGSSLVGRSLSQWKSVLAALKENKSKNIMDILRISYVQLDEKDQQTFLDIACFFNSYYKDVKEILDFRGFHPEDSIQVLKDKSLITKDPYGFIHMHSLLVDLGRCIVREESPKEPIKWSRLWTLKDLHDAMSENEATRNLEAIVVKYNWEWDDAEIPDETIKADGLSKIKHLKLLYVGDLEFSGSLSHLSNELGYLIWKRYPFECLPQSFQPHKLVELILSGDSIQRLWEGTKPLPNLKRLDLSFCKSLVEMPDVAEALNLERINLEGCIQLEKLNPWIESLRKLVLLNLRNCIKLVILPNTILGLNSLKYLDVRGCSIDSKCLLDEARNAEHLISCLSPSFLFPCLRELDLSFCNLVKIPEDIGKLHCLEILSLEGNNFVELPNLKDLFRLYFLNLGHCKRLKYLPDLPSQTVLPSEPFILPRLPSSKFDSLDFWNDDEVSDYQSAGLIIFSCPGLVEIEQCRRKSFSWTIQILKATYYWPFFGSIMPGSQIPSWFNNEGVKVEKEFLTIGPPPVPHDNNLLGVLYCVIFRLDNETEVKYSRTTNFRNKQIPMDFRRDLVIDQSDHMLIQYIDVSMRPGFGINGFQVHHKWRSNFEMLGYENVVAADVKKYKYRWVNEQDFDYSLPRFDSSEAQVFLI 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00581 817 Gene3D - 1 127 IPR027417 -
Vian5g00581 817 Gene3D Ribonuclease Inhibitor 313 508 IPR032675 -
Vian5g00581 817 Gene3D Ribonuclease Inhibitor 509 644 IPR032675 -
Vian5g00581 817 PRINTS Disease resistance protein signature 169 183 - -
Vian5g00581 817 PRINTS Disease resistance protein signature 71 85 - -
Vian5g00581 817 PRINTS Disease resistance protein signature 411 427 - -
Vian5g00581 817 SUPERFAMILY L domain-like 288 586 - -
Vian5g00581 817 Pfam NB-ARC domain 1 206 IPR002182 GO:0043531
Vian5g00581 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 228 IPR027417 -
Vian5g00581 817 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 496 IPR044974 GO:0006952
Vian5g00581 817 ProSiteProfiles Leucine-rich repeat profile. 547 568 IPR001611 GO:0005515
Vian5g00581 817 Gene3D - 135 218 IPR042197 -
Vian5g00581 817 Pfam Leucine Rich Repeat 525 545 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00581 Vian-Chr5 20951686 20954702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00581 1 615 WRKY Transcription Factor Family AT5G45050 29.846 1.95e-65 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00581 - - vra:106760531 1054.66