Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00571 ATGGCGACGAGAGCAGCAGTGGCGGCGCCACACGTTTTGCGACGCTTTTTCTGCTCAAACTCTGCTTCTTCTACTTTCCCTTTCGTTCCTACGCCGCCTGCGGGTGCTGTCCCCACTCCCGCACGACCCACGGCGGAGCCCAACACCAATCTCTTTGTCTCTGGGCTTAGCAAACGGACTACAACAGAAAAGCTTCGGGAAGAATTTTCAAAGTTTGGTGAAGTCGTTTATGCAAGGGTGGTAGCTGATCGAGTCTCAGGCTACTCTAAGGGGTTTGGTTTTGTGCAATATGCAACAATAGAAGATGCTGCAAAGGGCATTGAAGGAATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCTAGACCAAGACCACCTCCAGCACATCTAAATAACAACAGTCCTCCGTTTGGCCGGCAGTGA 435 0.5057 MATRAAVAAPHVLRRFFCSNSASSTFPFVPTPPAGAVPTPARPTAEPNTNLFVSGLSKRTTTEKLREEFSKFGEVVYARVVADRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPAHLNNNSPPFGRQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00571 144 SMART rrm1_1 50 123 IPR000504 GO:0003723
Vian5g00571 144 FunFam RNA recognition motif-containing protein 28 139 - -
Vian5g00571 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Vian5g00571 144 SUPERFAMILY RNA-binding domain, RBD 40 139 IPR035979 GO:0003676
Vian5g00571 144 Gene3D - 30 136 IPR012677 -
Vian5g00571 144 PANTHER NUCLEOLAR PROTEIN 8 20 137 - -
Vian5g00571 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00571 Vian-Chr5 20455024 20464805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00571 48 129 Eukaryotic Initiation Factors Gene Family AT4G34110 34.146 1.77e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00571 - - gmx:100789351 235.728