Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00570 ATGCTTGAAGATGAATATGAAGGATGGTTAAGCACACAAATCATAAAAGATTTTGAGCATTATGCATATACATGCTTCAAAGCTTTTGGAGACAGAGTTAAGCACTGGATTACCTTCAATGAGCCTCATAATTTTGCACTCCATGGTTATGATTTAGGAATTCAAGCACCAGGAAGATGTTCCTTGTTAGGTCATCTTCTATGCAAGAAGGGAAAATCATCCACTGAGCCATACATTGTTGCTCATAACATTCTCTTATCTCATGCTGCTGCCTACAGAAGCTACCAACTACATTTCAAGGAAGAACAAGGAGGACAAATAGGAATAGCACTAGATGTTATATGGTATGAACCAATAACAGAACTTGATGAAGACAGAGATGCAGCATCAAGAGCTATGGACTTCTCACTTGGATGGTTCCTTGATCCACTTTTCTTTGGAAAATACCCTCTCTGGATGAAGAAACTTGTAGGTGAGAGATTACCAGAGATTTCTTCTGCAACCTCAAAGTTTCTTGTGGGATCTTTGGATTTTATTGGCATAAACCATTACACCTCATTATATACTCGTAACGATAGGACCAGGATTCAAAAACTGGTTATGCAAGATGCTGTTTCTGATGCTGCAGTTATTACAACCGCATACCGAAGAGGAGCTGCAATTGGAGAAAAGGCAGCTTCAAGTTGGTTGCACATTGTCCCATGGGGCATCAGAAAGTTGGTAAAACATGTGAAAGACAAATATGGGGACACACCAGTAATTATAACAGAGAATGGAATGGATGACCCAAGCAAACCCTTTATGACCTTACAGAAGGCCTTAAAAGATGAGAAGAGGATAAGATACCATAGAGACTATCTTTCAAACCTATCTGCTGCTATATGGGAAGATGATTGCAATGTACGAGGTTACTTTGTATGGTCATTGCTTGACAATTGGGAGTGGAACATGGGATACACTGTACGGTTTGGACTTTACTACGTGGATTTCAAGAACAATCTTACTAGGATACCAAAAGATTCTGTGCAATGGTTCAAAAACATGCTCAGAATAGATACAGAAAGGGGTAGTGAAATTTGA 1080 0.3926 MLEDEYEGWLSTQIIKDFEHYAYTCFKAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGHLLCKKGKSSTEPYIVAHNILLSHAAAYRSYQLHFKEEQGGQIGIALDVIWYEPITELDEDRDAASRAMDFSLGWFLDPLFFGKYPLWMKKLVGERLPEISSATSKFLVGSLDFIGINHYTSLYTRNDRTRIQKLVMQDAVSDAAVITTAYRRGAAIGEKAASSWLHIVPWGIRKLVKHVKDKYGDTPVIITENGMDDPSKPFMTLQKALKDEKRIRYHRDYLSNLSAAIWEDDCNVRGYFVWSLLDNWEWNMGYTVRFGLYYVDFKNNLTRIPKDSVQWFKNMLRIDTERGSEI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00570 359 FunFam Beta-glucosidase 7 1 352 - -
Vian5g00570 359 SUPERFAMILY (Trans)glycosidases 2 350 IPR017853 -
Vian5g00570 359 Gene3D Glycosidases 1 351 - -
Vian5g00570 359 PANTHER GLYCOSYL HYDROLASE 1 351 IPR001360 GO:0004553|GO:0005975
Vian5g00570 359 PRINTS Glycosyl hydrolase family 1 signature 276 287 IPR001360 GO:0004553|GO:0005975
Vian5g00570 359 PRINTS Glycosyl hydrolase family 1 signature 253 261 IPR001360 GO:0004553|GO:0005975
Vian5g00570 359 PRINTS Glycosyl hydrolase family 1 signature 322 334 IPR001360 GO:0004553|GO:0005975
Vian5g00570 359 PRINTS Glycosyl hydrolase family 1 signature 175 189 IPR001360 GO:0004553|GO:0005975
Vian5g00570 359 PRINTS Glycosyl hydrolase family 1 signature 298 315 IPR001360 GO:0004553|GO:0005975
Vian5g00570 359 Pfam Glycosyl hydrolase family 1 2 350 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00570 Vian-Chr5 20442382 20445387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00570 2 294 Glycoside Hydrolase AT5G54570 70.648 2.82e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00570 K01188 - gmx:100783543 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00570 5 20442382 20445387 Vian5g00570 5 20442382 20445387 ECH