Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00566 ATGGTGGGAAAAAATCTACAACTGAGATCAATATGCTATGGTTTCTTCTTACTGCTGAGTTTCAGACCACATGTTACGAAGGCACAAACACCGAGTTTTCTGGCAAGTAATTGCCAAAACACAACCCAAGAACCCCTCAGCAGTGTATACCAAACAAATCTTGATGGCATGCTCAGATGGGCATCGTCAGACGCAGCCACAAGCAAAGGTTATAACTACAAAAGTATAGGTAAAACCAGTCCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTGGTTGGATACTTTTGTCAATTCTGTGTCTCCATTGCTGCCAAGGAAGCCCCTCAGCACTGCCCCAACAGGGTCTCTGCTATGGTTTGGTATGATTTTTGTGTTATAAGGTACTCCAATGAGAGCTTTTATGGGACTGTTTTAACAAACATATCATGGCATGTTCTTGGAGAGAAAAATATATCCAACATGGAAGATATTCAGAAAGGTGATGATTTTGTGAGAGGTTTGATCAGAAAAGCAACAAAGGAAACTAACCAGTTGTTTTATATGGATGTCTTCAATTTGAGTTCCACAGAGAAAAGATATGGCTTGGTGCAATGTTCTAGAGATCTCACAAACGAAGGGTGCAGACAGTGTTTGGAGACAATATTAGCCCAAGTGGCCAAATGTCGTGAACAGAAATTAGGATGGGTGGTTTGGACTGGAAGTTGTGCGATAAAGTATGATGATCATATGTTCTACCAAACATCTTCAGTTGCTGAGCCTAATCCGAAATTAGCTAAGCAAGGGGGTAATAACAGGTCAAAAATCTTGATTATTAGCTTCAGTGTGACAGGGTCAATAACTTTACTATGTCTGAGTGTATATGGGTGGTGGTGTAGAACTAGAAAAGATGGTCTGATAGCTCGTGCCATTCGTCTATCATCATATCACAATATTCAAACTGAGGACACACTGAATCCAGACCTTCCTACTATCCCATTAATCACAATTCTACAAAGTACTGGTAACTTCTCTGAAGTATCAAAACTGGGGGAAGGTGGATTTGGCCCAGTGTACAAGGGAATTCTGCCTGATGGAAGACAAATTGCAGTTAAAAGGCTGTCACAATTTTCTGGTCAAGGCTCAGAGGAGTTCGATAATGAAGTAATGCTTATAGCTAAACTGCAACATCGCAACCTTGTGAGACTTCTTGCATGTTGCTTGGAGGAAAATGAAAAGATACTAGTTTATGAATATTTGCCTAATAAAAGCCTAGACTTTCATCTGTTTGATGATGAGAGAAAAAAACATTTTGATTGGAAATTAAGATTAAGAATTATCAATGGAATAGCAAGAGGTGTTTTATACCTTCATGAGGACTCTCGACTGAAAGTAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCCTGAATTGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAAAGGACAGAACCAGGCAAATACGAAACGAGTGATAGGCACATATGGATACATGGCTCCGGAGTATGCTATGGAAGGATTGTTTTCAGTGAAATCTGACATTTTCAGTTTCGGAGTTATCGTCCTAGAAATCATTTGTGGGAGGAAAAATAGGGGATTCTATCTCTCAGAGCATGGTCCAACCCTTCTGTTGTATGCTTGGAGAATATGGTGTGAAGGAAAATGTTTGGAAATGATGGATCCAACGCTGGAAAAATCCTTCGTAGGAAGTGAAGTTGAGAGATGCATACAGATTGGTCTGTTATGTGTTCAAGAAGATGCGAAAGATAGATCAACCATGTCTGATGTTGTTGTGATGTTGGCAAGTGAGGGAATGGTCCTTCCAAAACCCAAGCATCCACCCTTTTCGATTGGAAGAATGACCTTAGCGGAATTCTCTACATCAAACAGTTCCAAGAACCTTTCCATTAATGATGTAACAACCTCTGTTACTATGCCGAGATAA 1968 0.4004 MVGKNLQLRSICYGFFLLLSFRPHVTKAQTPSFLASNCQNTTQEPLSSVYQTNLDGMLRWASSDAATSKGYNYKSIGKTSPVYGLYDCRGDVVGYFCQFCVSIAAKEAPQHCPNRVSAMVWYDFCVIRYSNESFYGTVLTNISWHVLGEKNISNMEDIQKGDDFVRGLIRKATKETNQLFYMDVFNLSSTEKRYGLVQCSRDLTNEGCRQCLETILAQVAKCREQKLGWVVWTGSCAIKYDDHMFYQTSSVAEPNPKLAKQGGNNRSKILIISFSVTGSITLLCLSVYGWWCRTRKDGLIARAIRLSSYHNIQTEDTLNPDLPTIPLITILQSTGNFSEVSKLGEGGFGPVYKGILPDGRQIAVKRLSQFSGQGSEEFDNEVMLIAKLQHRNLVRLLACCLEENEKILVYEYLPNKSLDFHLFDDERKKHFDWKLRLRIINGIARGVLYLHEDSRLKVIHRDLKASNVLLDPELNPKISDFGLARAFEKGQNQANTKRVIGTYGYMAPEYAMEGLFSVKSDIFSFGVIVLEIICGRKNRGFYLSEHGPTLLLYAWRIWCEGKCLEMMDPTLEKSFVGSEVERCIQIGLLCVQEDAKDRSTMSDVVVMLASEGMVLPKPKHPPFSIGRMTLAEFSTSNSSKNLSINDVTTSVTMPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00566 655 Gene3D Phosphorylase Kinase; domain 1 300 412 - -
Vian5g00566 655 SUPERFAMILY Protein kinase-like (PK-like) 322 635 IPR011009 -
Vian5g00566 655 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 413 616 - -
Vian5g00566 655 FunFam Cysteine-rich receptor-like protein kinase 10 301 412 - -
Vian5g00566 655 ProSiteProfiles Gnk2-homologous domain profile. 31 134 IPR002902 -
Vian5g00566 655 FunFam Cysteine-rich receptor-like protein kinase 28 34 133 - -
Vian5g00566 655 ProSiteProfiles Protein kinase domain profile. 337 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00566 655 SMART serkin_6 337 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00566 655 Gene3D - 142 245 IPR038408 -
Vian5g00566 655 Gene3D - 30 134 IPR038408 -
Vian5g00566 655 Pfam Salt stress response/antifungal 178 242 IPR002902 -
Vian5g00566 655 Pfam Salt stress response/antifungal 38 131 IPR002902 -
Vian5g00566 655 Pfam Protein tyrosine and serine/threonine kinase 341 605 IPR001245 GO:0004672|GO:0006468
Vian5g00566 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Vian5g00566 655 CDD STKc_IRAK 343 608 - -
Vian5g00566 655 Gene3D Transferase(Phosphotransferase) domain 1 413 614 - -
Vian5g00566 655 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Vian5g00566 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00566 Vian-Chr5 20302481 20305439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00566 13 655 Receptor kinase-like Gene Family AT4G05200 39.881 2.56e-170 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00566 Pkinase 4.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00566 - - gmx:100795922 953.74