Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00565 ATGATGACCAAATGTTCTACCTTCTTAATAACCAATCATCTTCAAGTCGGGAATCAGGTGAATCTGAATATGATAACAGTACATTTGGATTATTTTTTATTTTTAGGTTTAATTTCTTTTTTTGTTGCAGATAAACATGGAGGTAGAAAGAGGTCAAAAATCTTAATCATGAGCTTCTCTGTGATGGGGTCAACAACCCTTCTATGTTTGGGTGTATATTTTTTCTGTTACAGAAGAAGAGATGGGATTCGGCTGTCATCATTTCATAAAATTCAAACTGAGGAAATGTTGAACACTGACCTGCCTATAATCCCATTAATCACAATTCTGCAGAGTACTGATAACTTTTCAGAAGCATCTAAATTGGGGGAAGGTGGATTTGGCTCCGTTTACAAGGGGATTCTACCAGATGGAAGACAAATAGCAGTCAAAAGGCTGTCAGAATTTTCTGGTCAAGGTTCAGAGGAGTTCAATAATGAAGTAATGTTTATAGCTAAATTGCAACATCGAAACCTTGTAAGACTCTATGCATGCTGCTTGGAGGAAAACGAAAAGATACTTGTATACGAGTATATGCCAAACTCAAGTCTGTACTTTCACCTGTTTGATGATGAGAAAAGAAAACAACTTGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAGAGGTCTTCTATACCTTCATGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGACATGAATCCCAAAATATCAGACTTTGGATTGGCAAAGGCATTTGAAATTGGACAGAACCAAGCTAATACAAAGCGAGTAATGGGCACTTTTGGATACATGGCTCCTGAGTACGCTATGCAAGGATTGTTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTAGTTCTGGAAACCATTTGTGGAAGAAAAAACAACGGATTCTATCTGTCAGAGCATGATGAAACTCTTCTTTTATACGCTTGGAGAATATGGTGTGAAGGAAAATCTTTGGAATTGATGGACCCAATGCTGGAAAATTCCTTCAAAGCCAGTGAAGTTGAGAAGTGCATACACATTGCATTGTTGTGTGTTCAAGAAAATGCAACGTACAGACCAACCATGTTAGATGTTGTTGTAATGCTAGGGAGTGACAGATTGACCCTTCCAAAACCCAAGCACCCAGCATTTTCTGTTGGAAGAAAGTTCTCAGAGGAAGTACCAAAATCAAAAAGATCCAAGAATCTTCTTAGTACTGTTGTAACAATCTCTATTACTTTACCTAGGTAA 1305 0.3732 MMTKCSTFLITNHLQVGNQVNLNMITVHLDYFLFLGLISFFVADKHGGRKRSKILIMSFSVMGSTTLLCLGVYFFCYRRRDGIRLSSFHKIQTEEMLNTDLPIIPLITILQSTDNFSEASKLGEGGFGSVYKGILPDGRQIAVKRLSEFSGQGSEEFNNEVMFIAKLQHRNLVRLYACCLEENEKILVYEYMPNSSLYFHLFDDEKRKQLDWKLRLSIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDHDMNPKISDFGLAKAFEIGQNQANTKRVMGTFGYMAPEYAMQGLFSVKSDVFSFGVLVLETICGRKNNGFYLSEHDETLLLYAWRIWCEGKSLELMDPMLENSFKASEVEKCIHIALLCVQENATYRPTMLDVVVMLGSDRLTLPKPKHPAFSVGRKFSEEVPKSKRSKNLLSTVVTISITLPR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00565 434 SMART serkin_6 116 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00565 434 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Vian5g00565 434 SUPERFAMILY Protein kinase-like (PK-like) 90 387 IPR011009 -
Vian5g00565 434 FunFam Cysteine-rich receptor-like protein kinase 10 80 191 - -
Vian5g00565 434 Gene3D Transferase(Phosphotransferase) domain 1 192 394 - -
Vian5g00565 434 CDD STKc_IRAK 122 387 - -
Vian5g00565 434 ProSiteProfiles Protein kinase domain profile. 116 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00565 434 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 411 - -
Vian5g00565 434 Pfam Protein tyrosine and serine/threonine kinase 119 385 IPR001245 GO:0004672|GO:0006468
Vian5g00565 434 Gene3D Phosphorylase Kinase; domain 1 81 191 - -
Vian5g00565 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vian5g00565 434 FunFam cysteine-rich receptor-like protein kinase 10 192 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00565 Vian-Chr5 20291544 20293552 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00565 42 402 Receptor kinase-like Gene Family AT4G05200 51.657 3.29e-128 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00565 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00565 - - gmx:100795922 566.614