Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00549 ATGCCTATGTCTGTTCTGCTTCAAGGGATATGGCCAGAGTCTCCAAGTTTCAGAGATGAGGGTATAGGGGAGATCCCTTCAAGGTGGAAAGGAGTTTGCATGGAGGGTCATGATTTCAAGAAATCCAATTGCAATAGAAAATTGATTGGTGCAAGATTCTACAATATTGAAGCTACACCAGGTAGCAACCAGACTCAAATAGAAGCAAGCAAAGGCATTAACTTCTCAAATCTTACTCATTCAAAGATGCATAACCTTGTCTTTGGAGAGCAAGTAGCTGCCAAATTTTCCCCTGCATCAGAAGCTAGGAATTGTTATCCTGGATCATTAGATTACAACAAAATTGCTGGCAACATTGTTGTTTGTGCTAATGATGATCCAACTGTTGCAAGGCGAATCAAGAAGCTAGTTGTACAAGATGGAAGAGCCATAGGGTTGATACTCATTGATGAGGACAACAAAGATGTTCCCTTTGATGCAGGTGTCTTTCCCTTCACTGAGCCGGATGTGATGGCTCCAGGAATTGGCATTTTGGCTGCTATGATTCCTAAAAGTACTGACCCGGGAACAACGAATTACAACAACTTGAGGAAGCCTCTCACTAACAGCTCAAACTACATTGCTGACCCACATGAAATTGGAGTTGGTGAAATTAATCCAGTCAAAGCTCTCTACCCTGGATTAGTTTTTGAAACAAACATAGAAGACTATCTCAGATTCCTCTGTTATTTTGGCTATTCACAGAAAAAGGTAAGGTCAATGTTTAAGACCAACTTTGATTGCCCCAAGAACTCCTCTGAAGACCTTATATCCAACATCAATTATCCATCAATATCTATAAGTACACTTAAAAGGCAACAAAAACCAAAAGTGATCACAAGAACAGTTACCAATGTTGGATCCCCTAATGCCACATACACTGCAAAAGTGAGATCATCTGAGGGATTGGTTGTGAAGGTCATCCCCAATAAACTTGTGTTTTCTGAGGGTGTTCAAAGAATTACCTACAAAGTCTCATTCTATGGCAAGGAGGCCAATGGTGGATACAATTTTGGATCTCTAACATGGCTTGATGGCCACCATTATGTTCATACCGTCTTTGCAGTCAAAGTTGAATAA 1119 0.4048 MPMSVLLQGIWPESPSFRDEGIGEIPSRWKGVCMEGHDFKKSNCNRKLIGARFYNIEATPGSNQTQIEASKGINFSNLTHSKMHNLVFGEQVAAKFSPASEARNCYPGSLDYNKIAGNIVVCANDDPTVARRIKKLVVQDGRAIGLILIDEDNKDVPFDAGVFPFTEPDVMAPGIGILAAMIPKSTDPGTTNYNNLRKPLTNSSNYIADPHEIGVGEINPVKALYPGLVFETNIEDYLRFLCYFGYSQKKVRSMFKTNFDCPKNSSEDLISNINYPSISISTLKRQQKPKVITRTVTNVGSPNATYTAKVRSSEGLVVKVIPNKLVFSEGVQRITYKVSFYGKEANGGYNFGSLTWLDGHHYVHTVFAVKVE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00549 372 Gene3D - 241 371 - -
Vian5g00549 372 Gene3D Peptidase S8/S53 domain 8 59 IPR036852 GO:0004252|GO:0006508
Vian5g00549 372 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 5 58 IPR045051 -
Vian5g00549 372 Pfam Fibronectin type-III domain 272 369 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00549 Vian-Chr5 19381116 19384735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00549 6 55 Subtilisin-like Serine Gene Family AT1G20150 53.846 2.83e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00549 K25898 - gmx:100781053 459.529