Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00546 ATGGACCGTGATTCAGTGGGAAGCGAAGAGTACTCTTTGCTGAAGGATTTAAGACTCGAAATTGAAGCAAAGGACGGAACTTTCTCTCTCTGCTTTTGGCTTTATTTCACGACTTCCTCTGCATTCCCCTTTACCATTATTCAGCAGGTTTACTCTGATATCTCTGAAAGTGCTCCTTTTCTTGTTATTGATGATAACAAGAGAATCCATTTGTTACCAGTTCTGCTCTTACACGAAGAAGCTCCTGATACCGGCAATATAAATTCCTGGGCAGAAGTTCCACATGCAACTATTGATTTTAAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTCAGAATGAAACAGAAAAGCAAATTCCTTCTCGTAAGATTTTGCCTTCCATGAAAGAACTTGTGACGAACAATGGAGCACTTTTCTTGCTGCTACTAGTTTGTCCAGATTATATCCAGCTTCAGATTAATGGAGAGATTGTAGGAGACAAGTCTCACTGTTCCTTATTAAATGAAAAATCTGGTTCAAGAGATTTGAAGAAACTCACATTGGCAAATGTTGGCGGAGATGGAAATAGTGTACAGTGTTATGTGCACAATTTTGAAATATATCCTACTATTTCTTCTGTTAAGGATTACCATTTAAAGGACCCTCCTCTGAAGTTATCAATTGATGAATCATCTGTCTCCGAGATTGAAGAAGAAAGTGATGGTGTTTGGGCTGTTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTTTGGATGTTGTTCTATCAGATGCTTTTGGACAGCCCGTAGATAAGGAGAATGAGGTTTTTGCTTCACTTTTGTATGCCGACACTAGAGTTCTAGTGGAGAATACAACTGATGATGAAGCACCCCTTTTAGCTAGTTATGATGGAATTGAATTTTCTTCACGTGAAAGACCAAGTAAGCTTATGCTGGGTCGTGCTTCGTTTAAGCTCAAAATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTCTTCGTCATCAGATTTTGTGTTCCAAAATTAGGAAATTATCCTTTTCTTGAGACATACTCCCATCCAATTCGATGCATCTCCAGAAGCCGTAACACAAGATTGTCCACTTTGGTGTGGAAAAAGTCAACTGCTCTTAATTGCTCTAGTGTATCTCAATCTTCAGCTTTGGATGATGGGTCCTTCGAACTTCAGCATTCAGGTCATGAAGCACAAGCCAATCCACTAGTGAAGCGGTTTAGACTTGGTCAAGACAAGACATCTGTATCAGTGAAGACTGACCCCACCTTAGAGCAACCTGATGAAGAATGTAACTCTCAAGTCCAGACAGCTAACCAGGTTGAAAATGAATTTCCAAGAAGCTTCGATGGAAGACCTGCAAACTTCAATGAAGCATATGATTCTCCATCTGATTCAGAGAGTATAGGGGAGGGAAATTCACCTTTAAATACTGCGAGTAAAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTTGCAAGCTTGGCTGAGAAATCTCTCATACTCAAGGAAATTGCAACCTCTGCTCCTGACAAAGAAATTTTAGAATTCGCTAATCATGTGTCACACTATTCAGGATGTTCGCATCATGGAAACCAAATATTAATTGCCAAGAGATTAATAAACCATGGAAGAAATCTCTGGAAGGTGATGCCTCTAAACAATCACCACATTCCTTGGGAGAATGCTGTGTATGAGATTCAAGAGCATTTCGTGAATATTGCTTGTTGCAGTTCAAGGTCTCTCTCACCTCAGGACCTAAATCTTCTGAGAAGGATCGCTGGATGTCAAGAGTACCTAACACAAGAGAACTTCGAGAAGTTGTGGTGTTGGTTGTACCCTGTGGCAATTACAATATCAAGGGACTGGGTAAATCCTATCTGGAAATCCACATCACCTAAGTGGATAGAAGGGTTTATAACCAAGGAAGAAGCTGAAGCTTCACTACAAGGTCCCACAGGATTTCAAGAACCTGGTACCTTTGTACTCCGATTTCCTACCTCACGAAGCTGGCCACATCCAGATGCTGGTAGCTTAGTTGTAACCTATGTTGGCAATGACTACAAACTGCACCACAGGCTACTTTCTCTGCACCAGGTTTATGGTTCTTATAGCACTGGCGATAAAAGAGTTGACATGAAACCGCTTCAAGATATGCTATTGGCAGAACCTGAGCTGTCTCAATTGGGAAGGATAATAAGAAGTCATTAG 2238 0.4062 MDRDSVGSEEYSLLKDLRLEIEAKDGTFSLCFWLYFTTSSAFPFTIIQQVYSDISESAPFLVIDDNKRIHLLPVLLLHEEAPDTGNINSWAEVPHATIDFKFPLEKWVHVGCQNETEKQIPSRKILPSMKELVTNNGALFLLLLVCPDYIQLQINGEIVGDKSHCSLLNEKSGSRDLKKLTLANVGGDGNSVQCYVHNFEIYPTISSVKDYHLKDPPLKLSIDESSVSEIEEESDGVWAVVGGKASCRRNFSLDVVLSDAFGQPVDKENEVFASLLYADTRVLVENTTDDEAPLLASYDGIEFSSRERPSKLMLGRASFKLKISQLSSKCDNRFFVIRFCVPKLGNYPFLETYSHPIRCISRSRNTRLSTLVWKKSTALNCSSVSQSSALDDGSFELQHSGHEAQANPLVKRFRLGQDKTSVSVKTDPTLEQPDEECNSQVQTANQVENEFPRSFDGRPANFNEAYDSPSDSESIGEGNSPLNTASKRYPISDMTIFKYCLASLAEKSLILKEIATSAPDKEILEFANHVSHYSGCSHHGNQILIAKRLINHGRNLWKVMPLNNHHIPWENAVYEIQEHFVNIACCSSRSLSPQDLNLLRRIAGCQEYLTQENFEKLWCWLYPVAITISRDWVNPIWKSTSPKWIEGFITKEEAEASLQGPTGFQEPGTFVLRFPTSRSWPHPDAGSLVVTYVGNDYKLHHRLLSLHQVYGSYSTGDKRVDMKPLQDMLLAEPELSQLGRIIRSH 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00546 745 SUPERFAMILY SH2 domain 640 706 IPR036860 -
Vian5g00546 745 ProSiteProfiles Src homology 2 (SH2) domain profile. 644 745 IPR000980 -
Vian5g00546 745 MobiDBLite consensus disorder prediction 421 440 - -
Vian5g00546 745 MobiDBLite consensus disorder prediction 449 484 - -
Vian5g00546 745 MobiDBLite consensus disorder prediction 465 484 - -
Vian5g00546 745 Gene3D SH2 domain 632 742 IPR036860 -
Vian5g00546 745 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 736 IPR001217 GO:0003700|GO:0006355|GO:0007165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Vian5g00546 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00546 - - gmx:100803169 1204.12