Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00545 ATGGTTATCCCCTGTTTTTTCCAAACTAATTCCACTCGAACCAAGCATGCAGTCACCGGGATTTATTTGTTTTTCAGAATCCAATTCTCAAATTGGACCATCAAACCAATGTTGACAAGAACACAACAATTCCATTCGCAAGCATCCCTTGAATTCCAGAACAATAGAGGATTTTGTTTCCAAGACTGCGTCTTCCTCTTTCAGCACCTGAGGGACCACAAAGACGTAAAATGTGGCAGAATCCTTCACTCTCTGTTAGTTAAAAGTGCCCTCTTCATGGATGTCTTTATACAAAACAACATGATTAGATTTTACGGAGATATTGGAGAAGTTCAGAATGCACGTAAGTTGTTTGATGAAATTCCTCAGCCGAGTTTGGTTTCTTGGACAAGCTTGGTCTCTTGTTATGTTCACGCGGGGCAACATGAAATGGGTCTGAGTTTGTTTCGTGGCTTGTGCCGATCTGGGGTGCGCCCCAATGAATTTGGTTTCTCTGTGGCACTCAAGGCTTGCAAGGAGACGTGTGATGCTGTGATGGGGAAGCTCATTCATGGGTTGGTAATCAAAAGTGGCTTTGATTCGCATAGATTTTGCAGTGCTTTGATTCTTCACATGTATGGTGATTGTGGGGATATTAAGAACTCGAGGAAGGTTTTTGATGGGGTTTGTTATGGTGAAAGGTGTGAGGCATTGTGGAATACTTTGCTGAATGCTTATGTGAAGGTGTCTGATGTGGAGGGTTCTCTAAAGTTGTTTCATGAGATGGGGCACTCTTCTGTGTCGCGGAACCACTTTACTTACACAATCATTGTTAAACTCTGTGCCGATGTGTTGGACGTTGAACTTGGAAGGTCTCTTCATGGCCAGATTATGAAGATTGGGATTGAAAACGATGTTGTTGTGGGTGGGACACTTATTGACTGCTATGTTAAACTGCAATTATTAGATGATGCTCGTAAAATATTTCAAGTTCTCGATGAGAAGGATAACGTGGCAGTATGTGCTTTACTTGCTGGGTTTAATCAAGTCGGAAAATGTAAGGAAGGACTTGCATTATATGTTGATTTTCTTTCTGGAGGTAACAAACCAGACCCATTTACTTGCGCAAGTGTTGTCAGTTTGTGCTCAAATTTGGAGACACAGCTTTCCGGTAGTCAAATTCACTGTGGTGTCATCAAACTTGGCTTCATGTTAGATTCATATCTTGGCAGTGCATTTATCAACATGTATGGAAATTTTGGGATGGTGTCTGACGCTTATAGATGTTTTCTTGAAGTTTGCAATAAAAATGAAATATGTGTAAATGCCATGATTAACACTTTAATTTTCAACTCATATGATTTGAAAGCAATAGAGCTGTTTTGTGGGATGAGGGAAGTTGGTATTGCACAAAGCAGTTCTTCAATCAGTTATTGTCTGCGAGCTTGTGGGAACCTATTTTTGCTTAAAGACGGACGGTCTTTTCATTCTCTAGTGATTAAAATTCCTTTTGAAGATGACTGGCACTTCGTAGAAGCCCTGGGAATCTTCTGCGATATGCTTCTATATTCAAAACCTAGTCAGTTCACATTAGTTAGTGTTATTCAGACTTGCACAGAAATGAAGGCAATACATGTCTTCTTGTCAATGAAGGAGAAAGATCTTATCTCTTGGAGTGTCATGTTAACGGCATGGGTTCAAAATGGCTATCATGAAGAAGCACTTAAGCATTTTGCAGAATTCCAAACTGTTCCCATTTTTCAGGTTGACGAGTCTATCTTATCCAGCTGTATTTCAACTGCTGCTGGCTTAGCAGCATTGGACATAGGCAAATGTTTCCATTCCTGGGTTATCAAAGTTGGCCTCGAGGTTGATCTTCATATGCCAAGTGTTAAGCCTGATGTATCGGAGAGAGACTCAGAGCCATTTGAAGAGGGGATAGAGGTGGCATGGAACCAAGTGAAACTGAGGAACTTCAGTAATGATCTTGCAATGGTGGAAAGGCTTTACTTTGAGGTGAGATTGCTCAGAAGCTTGACCAACAAAAACATCATCTCCCTTTACAGCGTTTGGAGGGATGAGAAGCACAACACTTTGAACTTCCTCATTGAGGTCTGCACTAGTGGGAATCTGAGAGAGTACAAAAAGAAACACATGCATGTGTCCATGAGAGCCTTGAAAAAGTGGTCCAAGCAGATTTTGGAAGGGTTGAATTACTTGCATGTTCATGACCCTTCCTCCTCTTTTGATGGGGGTGTACGCGAAGCGCTTTAA 2253 0.4128 MVIPCFFQTNSTRTKHAVTGIYLFFRIQFSNWTIKPMLTRTQQFHSQASLEFQNNRGFCFQDCVFLFQHLRDHKDVKCGRILHSLLVKSALFMDVFIQNNMIRFYGDIGEVQNARKLFDEIPQPSLVSWTSLVSCYVHAGQHEMGLSLFRGLCRSGVRPNEFGFSVALKACKETCDAVMGKLIHGLVIKSGFDSHRFCSALILHMYGDCGDIKNSRKVFDGVCYGERCEALWNTLLNAYVKVSDVEGSLKLFHEMGHSSVSRNHFTYTIIVKLCADVLDVELGRSLHGQIMKIGIENDVVVGGTLIDCYVKLQLLDDARKIFQVLDEKDNVAVCALLAGFNQVGKCKEGLALYVDFLSGGNKPDPFTCASVVSLCSNLETQLSGSQIHCGVIKLGFMLDSYLGSAFINMYGNFGMVSDAYRCFLEVCNKNEICVNAMINTLIFNSYDLKAIELFCGMREVGIAQSSSSISYCLRACGNLFLLKDGRSFHSLVIKIPFEDDWHFVEALGIFCDMLLYSKPSQFTLVSVIQTCTEMKAIHVFLSMKEKDLISWSVMLTAWVQNGYHEEALKHFAEFQTVPIFQVDESILSSCISTAAGLAALDIGKCFHSWVIKVGLEVDLHMPSVKPDVSERDSEPFEEGIEVAWNQVKLRNFSNDLAMVERLYFEVRLLRSLTNKNIISLYSVWRDEKHNTLNFLIEVCTSGNLREYKKKHMHVSMRALKKWSKQILEGLNYLHVHDPSSSFDGGVREAL 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00545 750 Pfam PPR repeat 549 573 IPR002885 -
Vian5g00545 750 Pfam PPR repeat 127 157 IPR002885 -
Vian5g00545 750 Pfam PPR repeat 304 325 IPR002885 -
Vian5g00545 750 Pfam Protein kinase domain 641 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00545 750 Gene3D Tetratricopeptide repeat domain 496 623 IPR011990 GO:0005515
Vian5g00545 750 Gene3D Tetratricopeptide repeat domain 183 279 IPR011990 GO:0005515
Vian5g00545 750 Gene3D Tetratricopeptide repeat domain 280 385 IPR011990 GO:0005515
Vian5g00545 750 Gene3D Tetratricopeptide repeat domain 40 182 IPR011990 GO:0005515
Vian5g00545 750 Gene3D Tetratricopeptide repeat domain 390 481 IPR011990 GO:0005515
Vian5g00545 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Vian5g00545 750 ProSiteProfiles Protein kinase domain profile. 591 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00545 750 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Vian5g00545 750 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 282 620 IPR046960 GO:0003723|GO:0009451
Vian5g00545 750 NCBIfam pentatricopeptide repeat 231 261 IPR002885 -
Vian5g00545 750 NCBIfam pentatricopeptide repeat 127 161 IPR002885 -
Vian5g00545 750 Gene3D Phosphorylase Kinase; domain 1 638 699 - -
Vian5g00545 750 Gene3D Transferase(Phosphotransferase) domain 1 656 736 - -
Vian5g00545 750 SUPERFAMILY Protein kinase-like (PK-like) 638 734 IPR011009 -
Vian5g00545 750 Pfam PPR repeat family 230 275 IPR002885 -
Vian5g00545 750 FunFam Pentatricopeptide repeat-containing protein At5g40410, mitochondrial 82 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00545 Vian-Chr5 17373702 17379161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00545 637 738 MAP Kinase Kinase Kinase AT5G55560 79.412 4.56e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vian5g00545 Pkinase 1.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00545 - - gmx:102668678 981.089