Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00541 ATGGAAACACACCAATCTTTGTTAGACAACCCTAGAAAATCCGTTTCCAAAACTATATGCTTAATCTTCTCTGTAGCTGTTGTGCTAACTTCATCAGCTCTTATTGCTTCCTATATCTCAAAACCCTCTCCCTTATTCAACCACGACATTTCTCACCGTGTTTGTGATCATGCAATTGATCCTTCAGCCTGCTTGGCACATGTCTTGGAAGTGGAACAAGATCCGATGTTCGGTGCCACACAAAACCATAGATTCGGATTGCTCAAATCCTTTTTAATGAAATCCACCTCACACATTGAGAGAGTGATAGGGGCATCCAACGCTATGAGGGTGAGGATGAACAATCCAGGAGAAGAAGCCGCTTTGCGGGATTGCGTGGAGCTGATGGAGTTGTCCGTGGACAGAGTTTGGGACTCAAAGGCCAACCTAACCAAAGGGACCACTGATTCGGCGCAAGATGCCCACACTTGGCTAAGAAGGGTGCTCACCAATCATGTAACTTACTTGGAGGGACTGAAGGGGCGAGCTCCAAGGGTGATGGAGGCAGAGGTTCAGGACTTGATCTCGAGAGCAAGAAGCTCTTTAGCCATGTTCGTTGCTGTTTTGCCTCCAAATCCGGAGGTTGAAGTCTTAGATGTAGTTATAGACAATGTGTTTCTCCACGAACTTGTGTCATGCCATACAAAATAG 690 0.4609 METHQSLLDNPRKSVSKTICLIFSVAVVLTSSALIASYISKPSPLFNHDISHRVCDHAIDPSACLAHVLEVEQDPMFGATQNHRFGLLKSFLMKSTSHIERVIGASNAMRVRMNNPGEEAALRDCVELMELSVDRVWDSKANLTKGTTDSAQDAHTWLRRVLTNHVTYLEGLKGRAPRVMEAEVQDLISRARSSLAMFVAVLPPNPEVEVLDVVIDNVFLHELVSCHTK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00541 229 CDD PMEI-like_4 57 201 - -
Vian5g00541 229 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 201 IPR035513 -
Vian5g00541 229 PANTHER PECTINESTERASE 24 199 - -
Vian5g00541 229 Pfam Plant invertase/pectin methylesterase inhibitor 52 187 IPR006501 GO:0004857
Vian5g00541 229 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 197 IPR035513 -
Vian5g00541 229 NCBIfam pectinesterase inhibitor domain 22 186 IPR006501 GO:0004857
Vian5g00541 229 SMART PMEI_2 46 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00541 Vian-Chr5 17272899 17274047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00541 3 229 Carbohydrate Esterase AT1G11580 30.213 1.37e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00541 K01051 - gmx:100815836 246.128