Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00538 ATGAAGGATGGTGGAAGAAAACAAGGTGCAATGTCACCATGTGCAGCATGCAAGCTTCTTCGAAGGAGATGTGCAGAGGATTGTGTGTTTGCTCCTTATTTTCCTGCAGATGAGCCACACAAGTTTGCCAGTGTGCACAAGGTTTTTGGAGCTAGCAATGTCAACAAAATGTTACAGATAAGGTACATGGTGAAGTGTCCAAAGATTATACCTGATGAACTACCGGAGTACCAACGAAGTGATGCTGTTAGTTCAATGGTATACGAAGCCAATGCAAGGGTGAGAGATCCCGTGTATGGATGTGTGGGAGCCATATCTTCTCTGCAGCAACAAGTTGATGTTTTACAAACCCAGTTGGCACTTGCACAAGCAGAGGTTGTGCACATGAAACTGAGCCAAGTTTCAACTTCCTCTGAACAACTCAAAGCAGTGCCTGCAACATCCAATTCATCCTCAGAGAACTTATCTCCATCAAGTAAACTTGCCAAAACCCTTTTTGCTATGGACATGGTCGTTGATCAGCCAAACATGGGAGTGTCTCTGTGGTCATGTTAG 555 0.445 MKDGGRKQGAMSPCAACKLLRRRCAEDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQIRYMVKCPKIIPDELPEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMKLSQVSTSSEQLKAVPATSNSSSENLSPSSKLAKTLFAMDMVVDQPNMGVSLWSC 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00538 184 Coils Coil 105 125 - -
Vian5g00538 184 ProSiteProfiles LOB domain profile. 12 126 IPR004883 -
Vian5g00538 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 152 - -
Vian5g00538 184 Pfam Lateral organ boundaries (LOB) domain 13 123 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00538 Vian-Chr5 16879349 16883099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00538 1 184 AS2 family AT1G31320 61.497 2.47e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian5g00538 LOB 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00538 - - ccaj:109811748 256.914