Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00514 ATGGTCAATTGTAAACCTCAACATTTTCTGCTTGCTTTGAGTTTCTGCTGGTGGACTACTTCTATCCACGTCAGCTCTGAAAAGCACAGTCTGAAACCTGGAGAAAAACTGAACAGCACCACCCTGTTACGTTCTGAAAAAGGTTATTATGTTATTAAGATTGTAACAAGTTACTTGCAGATCTATGGCCCCAAAAATGAGAATTGGCCAGTGTGGATTGGTAATAGAAATCAACCTGTTGACACGGGTTCTGCAGTTCTGCTGCTAAACCACTCTGGTGTACTGAAAATAGAATCCAAAGATATTGAACCCATCATCCTTTACTCTTCACCACAACCTTCCGAAAACACTGTGGCCACCTTGTTGGACACGGGCAACTTTGTACTGCAACAACTTCACCCCAATGGAACAAACACAACGCTGTGGCAAAGTTTTGATTACCCTACTGATAATTTGTTCCCTGGGATGAAGTTAGGTGTCAAACACAAGAGTGGTCATAAATGGTCACTAGTTTCGTGGTTGACCTCTGAAAAACCAAGTCTTGGGGCATTTGAACTTGAATGGGAACCCACTGAAAGGGAATTGACCATCAAGCGAAGAGGAAAATTATGTTGGGCAAGTGGGAATCTGGGAAACGGTGGATTCATACACGACACATATTACATTATTGTCTCAAATGAAAACGAAAGCTACTTCTCAATCACAACTTTGAATGGAGAGCTTACAAGATGGGTGCTTTTAGAAACTGGGCAGCTGATAAATCGGAATGGAGCCGATAATAATGTTGCGAGGGCTGATCTGTGTTATGGCTACAACACAGATAAAGGGTGCCAACGATGGGAGGATATACCCTTATGCAGGCATCCTGGTGATGCATTTGACAGCAGGGAAGGGTACCCCAATGAAGACATGGCAAAATTTCTAGAAAATTCGAGTTATGGGCTAAGTGATTGTCAGGATATGTGCTGGAGAAACTGCAATTGTACTGGATTCAAAAACTATTATGATGATGGTGGAACTGGTTGTGTATTCTATCACAAGAACTTCACCACGGGTACTAATTTTGCAAGTGGGGGCTCTAAATTCTTCGTACTTGTAAACAAACCCCATCACAAAGGTAAAAAAATGTGGATATGGATAACTGTTGTATCAGTAGTAGCTGCTCTGTTAGTAATCTCTGCAATTACTCTTGCCATAAAGAAAAGAAAACGTCGTCTTGAAGGGAAAAAAAGAAAAGGGGTGGAGACTAAGAATATGGCAGATTTAGCAGCATCAAATAGATTCTATGATGTCAAAGGCTTTGACGATGAATTAAAGATCAGACAAAATCTAAAAGTGTTTCCCTTTACATTGGTATTGTGGGCAACAGAAGATTTTAATCCTGAAAACAAATTAGGTGAAGGAGGATTTGGACCTGTTTATAAGGGAATCCTTCCTTCTGGGCAAGAAGTTGCCATAAAAAGACTTTCAAAATCATCAAGACAAGGAATTGTGGAATTTGAAAATGAACTGGTGCTTATATGTGAACTTCAGCACACCAATCTTGTACAACTACTTGGATATTGTATTCACGAAGTGGAAAGGATTTTAATTTATGAGTTCATGTCAAACAAAAGCTTGGACTACTATCTATTTGATTGTGACAGAGGCAAGATTTTGGATTGGACGAAGCGCTTCAATATAATAGGAGGAATCTCTCAAGGATTACTATATCTTCATAAGTACTCGAGACTAAAAATAATTCATAGAGACTTGAAAGCCAGTAATATACTTCTTGATGAAAATATGAATCCAAAGATTTCTGATTTTGGATTGGCAAGAATGTTTACACAGGAAGAGTCCATGACAAATACTAGTAGGATTGTTGGAACCTATGGTTACATGTCTCCTGAATATGCCATGGAAGGAATTTTTTCTACAAAATCTGACGTCTACAGCTTTGGAGTGTTGCTACTTGAAATCGTTAGTGGAAGAAGAAATACTAGCTTATATGATGTTGATCAACCTCTTAATCTAATAGGACATGCATGGGAGTTATGGAAAGAAAGTGCAGTTCACCAATTAGTAGATCCATCATTGAGTGAGTCCTTTGATTTTGAAGAAATGAAAAGATGCATTCATGTGGGTCTCTTATGCGTGTCACAATATGCAAAAGATCGACCAACAATGTCTGATGTTATATCAATGTTAACAAAAGAAAGTTCAATAGTTACCTTGCCTCAAAGACCTGCTTTCTATTTGGAAAGAGATTACTCTTATAAGGAAGTATCTTATGAAGAGTTAAATACTGACTCTATGGAAGAAATTACTACTTCCTCTTGA 2322 0.3846 MVNCKPQHFLLALSFCWWTTSIHVSSEKHSLKPGEKLNSTTLLRSEKGYYVIKIVTSYLQIYGPKNENWPVWIGNRNQPVDTGSAVLLLNHSGVLKIESKDIEPIILYSSPQPSENTVATLLDTGNFVLQQLHPNGTNTTLWQSFDYPTDNLFPGMKLGVKHKSGHKWSLVSWLTSEKPSLGAFELEWEPTERELTIKRRGKLCWASGNLGNGGFIHDTYYIIVSNENESYFSITTLNGELTRWVLLETGQLINRNGADNNVARADLCYGYNTDKGCQRWEDIPLCRHPGDAFDSREGYPNEDMAKFLENSSYGLSDCQDMCWRNCNCTGFKNYYDDGGTGCVFYHKNFTTGTNFASGGSKFFVLVNKPHHKGKKMWIWITVVSVVAALLVISAITLAIKKRKRRLEGKKRKGVETKNMADLAASNRFYDVKGFDDELKIRQNLKVFPFTLVLWATEDFNPENKLGEGGFGPVYKGILPSGQEVAIKRLSKSSRQGIVEFENELVLICELQHTNLVQLLGYCIHEVERILIYEFMSNKSLDYYLFDCDRGKILDWTKRFNIIGGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGLARMFTQEESMTNTSRIVGTYGYMSPEYAMEGIFSTKSDVYSFGVLLLEIVSGRRNTSLYDVDQPLNLIGHAWELWKESAVHQLVDPSLSESFDFEEMKRCIHVGLLCVSQYAKDRPTMSDVISMLTKESSIVTLPQRPAFYLERDYSYKEVSYEELNTDSMEEITTSS 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00514 773 SUPERFAMILY Protein kinase-like (PK-like) 443 751 IPR011009 -
Vian5g00514 773 CDD STKc_IRAK 465 732 - -
Vian5g00514 773 Gene3D Transferase(Phosphotransferase) domain 1 535 739 - -
Vian5g00514 773 SMART serkin_6 459 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00514 773 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 535 738 - -
Vian5g00514 773 Pfam D-mannose binding lectin 71 173 IPR001480 -
Vian5g00514 773 Pfam PAN-like domain 304 349 IPR003609 -
Vian5g00514 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Vian5g00514 773 ProSiteProfiles Protein kinase domain profile. 459 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00514 773 Gene3D - 22 145 IPR036426 -
Vian5g00514 773 Gene3D Phosphorylase Kinase; domain 1 420 534 - -
Vian5g00514 773 Pfam Protein tyrosine and serine/threonine kinase 462 729 IPR001245 GO:0004672|GO:0006468
Vian5g00514 773 PIRSF SRK 255 773 IPR024171 GO:0004674
Vian5g00514 773 PIRSF SRK 3 267 IPR024171 GO:0004674
Vian5g00514 773 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 125 755 - -
Vian5g00514 773 SMART blect_4 28 148 IPR001480 -
Vian5g00514 773 ProSiteProfiles Bulb-type lectin domain profile. 22 142 IPR001480 -
Vian5g00514 773 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 176 IPR036426 -
Vian5g00514 773 CDD PAN_AP_plant 311 366 - -
Vian5g00514 773 ProSiteProfiles PAN/Apple domain profile. 286 367 IPR003609 -
Vian5g00514 773 FunFam Putative LRR receptor-like serine/threonine-protein kinase 438 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00514 Vian-Chr5 15531005 15533936 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00514 436 766 Receptor kinase-like Gene Family AT4G11530 54.955 8.66e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian5g00514 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00514 - - gmx:100820258 1080.09