Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00502 ATGGAACTCTCCGTTACGCACACTCCCAATCCTCTTCACTGTTTCTCATCACCACAACTCTTTCCAAACCCCAACGTTTTCACGCTAAGCGCACCGCGTCCCCGCAGAAAGCTTCGGTTCCGAGTTTCGGCCACCGCGGAGCCCGATGGGGCGTCGTGGTCGCAGTCGCTGCGGCGTGGGTCGCAGCGGTTCTGGATCAACTTTGGGGAAATGGTGAAGAAAGAGACGGGTCTTGACTTCCAGAACAGCAGCGTGAAGAACGTAGCCGAGGTTATGAGCGGAGATGAATTGCGAAGGTTTGGGACTCAGTGGGTGTCTCGGTTTGTCGATTGGAACCGGTGGGAACGCTGGAAGAATATCAAAGACTGGGAACCTTTGCGAATTGGCACATTTGTTCTTTATATTTTTGTTGTCACATTTGCTTGTAGAGGAGTATATGTTGCTGTTCAAGCACCTTTCCTAAATCGGCAGAAAAAAGAATTAGCAGAAGCTTACATGGAAGTGTTAATTCCTGAACCATCCCCTACTAACATCAGAAGATTTAAGAAGGGTATGTGGAAGAGGACCATGCCAAAAGGCCTAAAAATGAAAAAGCTTATTGAAAGACCTGATGGAACACTTGTTCATGATACTTCTTATGTTGGAGAGGATGCATGGGAGGATGATCAAGAGGAGCGTGTAAAACAAATTATAGAGGATGATGAAAGGTTAAACAAAGAAGAGAAGAAAGAACTAACAAAAGGCTTGGGCATTTCAGGTGAGGTTCAATTTGAGGGTACATGGCGTGAAAGACTTCATAAATGGAGAGACATCCTTAGAAAAGAACGTTTTGCCGAACAATTAGATTCCTTAAATGCCAAATATGTAGTTGAATTTGACATGAAAGAGGTTGAACAGAGTCTTCGGAAGGATGTAGCAGAGAAGGTGACACCCACTCAGGATACTAGGGCTCTATGGATAGCTAAGAGGTGGTGGCGCTATCGGCCTAAACTTCCTTATACTTATTTCCTCAACAAGCTTGATAATTCTGAGGCAACAGCTGTTGTCTTTACTGAAGATTTGAAAAAATTGTATGTGACAATGAAAGAAGGTTTTCCATTGGAATTTGTCGTTGATATCCCTCTCGATCCTCATCTGTTTGAGATTATTACGAGTTCTGGAGCTGAAGTAGATCTCCTTCAGAAGCGACAGATCCATTATTTCATGAAGGTTGTGATTGCTTTAGTACCTGGAATACTGATTCTCTGGCTTATAAGGGAGTCTGTGATGCTTCTACACATCACTTCCAAGAGGTTTCTTTACAAGAAGTATAATCAACTCATTGATATGGCCCGAGCAGAAAATTTCATTATGCCAATTGGAGACGTTGGTGAAACAAAGTCAATGTACAAGGAAGTTGTGTTGGGGGGTGACGTTTGGGATCTTCTTGATGAGTTAATGATCTATATGGGAAATCCTATGCAGTTCTATGAAAGGGGTGTGCAGTTTGTTCGGGGTGTTCTACTTTCTGGACCTCCAGGAACTGGAAAAACATTGTTTGCCAGGACACTTGCAAAAGAAAGTGGACTACCTTTTGTATTTGCTTCGGGTGCTGAGTTCACTGATAGTGAAAGAAGTGGTGCATCTAGGATAAACGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTAGATGAAATAGATGCTATTGCTGGAAGACATGCTAGGAAGGATCCTCGGAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGATGGGGAGAAGGAAAAAACTGGAGTTGACCGTGTATCTCTCAGACAAGCTATCATATTCATCTGTGCTACAAATAGGCCAGATGAATTAGATCCTGAGTTTGTTCGTCCTGGCCGTATTGATCGTCGACTGTACATTGGTTTGCCGGATGCAAAGCAGAGAATCCAGATTTTTGGTGTGCACAGTTCTGGAAAGCAATTGGCCGAGGATGTGAATTTTGAAGAGCTTGTCTTCCGTACTGTTGGATTCTCTGGAGCAGATATAAGAAACCTTGTTAATGAATCAGCAATAATGTCGGTGAGAAAAGGGCATTCCAAAATTTTCCAGCAAGATATTATTGATGTATTGGATAAACAACTGCTTGAGGGTATGGGTGTCCTTCTGACAGAGGAAGAGCAACAAAAATGTGAACAAAGGGTATCTTTGGAAAAGAGGAGATTGCTTGCTGTTCATGAAGCTGGGCATGTGGTGCTTGCTCACCTATTTCCTAGGTTTGATTGGCATGCATTTTCACAGCTCCTTCCTGGGGGCAAGGAAACTGCAATATCTGTATTCTATCCTCGAGAAGATATGGTAGACCAAGGTTATACAACATTTGGTTACATGATGATGCAAATGGTAGTGGCTCATGGTGGTCGATGTGCTGAACGTATTGTATTTGGTGATGATATAAGTGATGGAGGAAGCGATGATCTTGAAAAGATAACAAAGATTGCTAGGGAGATGGTTATCAGCCCTCAAAATAAGAAGTTGGGGTTAATCGGTTTAACAAAAAGGGTTGGTTTAATAGATCGACCAGACAGCCCAGATGGAGAGTTGATAAGATATAGATGGGATGACCCTCATGTAATTCCTGCTGACATGACGCTAGAGGTGTCTGAGCTTTTTACAAGGGAGTTGGCTAGGTACATTGAAGAAACTGAAGAACTTGCAATGAATGCTTTAAGGAATAATAGGCACATTTTGGACTTGATTGCAAAGGAACTACTGGAGAGGTCAAGGGTGACTGGATTGGAAGTTGAAGAAAAATTGAAGGAACATTCTCCCGTAATGTTTGAGGACTTTGCAAAGCCATTCCAAATAAACCCAGATGAGGAGGGACCATTACCGCATAATGATAGAATACGATATCACTTACCTGACTTATATCCTGCTCCTCTCCATAGATGTTGA 2940 0.4265 MELSVTHTPNPLHCFSSPQLFPNPNVFTLSAPRPRRKLRFRVSATAEPDGASWSQSLRRGSQRFWINFGEMVKKETGLDFQNSSVKNVAEVMSGDELRRFGTQWVSRFVDWNRWERWKNIKDWEPLRIGTFVLYIFVVTFACRGVYVAVQAPFLNRQKKELAEAYMEVLIPEPSPTNIRRFKKGMWKRTMPKGLKMKKLIERPDGTLVHDTSYVGEDAWEDDQEERVKQIIEDDERLNKEEKKELTKGLGISGEVQFEGTWRERLHKWRDILRKERFAEQLDSLNAKYVVEFDMKEVEQSLRKDVAEKVTPTQDTRALWIAKRWWRYRPKLPYTYFLNKLDNSEATAVVFTEDLKKLYVTMKEGFPLEFVVDIPLDPHLFEIITSSGAEVDLLQKRQIHYFMKVVIALVPGILILWLIRESVMLLHITSKRFLYKKYNQLIDMARAENFIMPIGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYERGVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSERSGASRINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRVSLRQAIIFICATNRPDELDPEFVRPGRIDRRLYIGLPDAKQRIQIFGVHSSGKQLAEDVNFEELVFRTVGFSGADIRNLVNESAIMSVRKGHSKIFQQDIIDVLDKQLLEGMGVLLTEEEQQKCEQRVSLEKRRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMVDQGYTTFGYMMMQMVVAHGGRCAERIVFGDDISDGGSDDLEKITKIAREMVISPQNKKLGLIGLTKRVGLIDRPDSPDGELIRYRWDDPHVIPADMTLEVSELFTRELARYIEETEELAMNALRNNRHILDLIAKELLERSRVTGLEVEEKLKEHSPVMFEDFAKPFQINPDEEGPLPHNDRIRYHLPDLYPAPLHRC 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00502 979 PANTHER ATP-DEPENDENT PROTEASE 126 950 - -
Vian5g00502 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 707 IPR027417 -
Vian5g00502 979 Pfam Peptidase family M41 729 930 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vian5g00502 979 Pfam ATPase family associated with various cellular activities (AAA) 500 636 IPR003959 GO:0005524|GO:0016887
Vian5g00502 979 Gene3D - 457 638 IPR027417 -
Vian5g00502 979 Gene3D Peptidase M41 722 938 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vian5g00502 979 Pfam AAA+ lid domain 659 700 IPR041569 -
Vian5g00502 979 SUPERFAMILY FtsH protease domain-like 732 942 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vian5g00502 979 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 639 710 - -
Vian5g00502 979 Gene3D - 639 712 - -
Vian5g00502 979 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 453 638 - -
Vian5g00502 979 Coils Coil 220 240 - -
Vian5g00502 979 FunFam ATP-dependent zinc metalloprotease FTSH 12, chloroplastic 722 937 - -
Vian5g00502 979 SMART AAA_5 496 639 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00502 Vian-Chr5 14579109 14607330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00502 463 933 Miscellaneous Gene Families AT5G53170 29.387 8.42e-58 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00502 K03798 - gmx:100819005 1764.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00502 5 14579109 14607330 Vian5g00502 5 14579109 14607330 ECH