Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00495 ATGGCAATGCAGTGGTCAATTGTAGATGATGGCTTTATCATTGGATTTGTGATTCAAGATCACCGCAATAACGCCCATAGTAGAAATTTAAGATCAGCCGAAGAAGATGGTGAAGTTTATATCATTGATGCCATGAACTTGGGTGGCAGCAACATGCAAAACAATAACGATAGAAGTTTAAGATCAAGCCAAGATAGTGTTTTGATCTTCGATTCCGTGCAAAACAACTATGATCCTTTGAAAAATTTTGAAAGGTTTATAATTGAAGAAAAAACAGAAGATCCTTGCAGCATATGTCTTGAGGAACTTGCAATTGGATTAAGAGCAGTTCGCATACCCCACCCATGTTCTCATATCTTTCATCACCACTGCATCAAAAAATGGCTCGACATCAATCGCACTTGTCCTTTGTGTCGCAGGAACATATAG 429 0.3846 MAMQWSIVDDGFIIGFVIQDHRNNAHSRNLRSAEEDGEVYIIDAMNLGGSNMQNNNDRSLRSSQDSVLIFDSVQNNYDPLKNFERFIIEEKTEDPCSICLEELAIGLRAVRIPHPCSHIFHHHCIKKWLDINRTCPLCRRNI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00495 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 142 IPR013083 -
Vian5g00495 142 ProSiteProfiles Zinc finger RING-type profile. 96 139 IPR001841 -
Vian5g00495 142 Pfam Ring finger domain 96 139 IPR001841 -
Vian5g00495 142 SMART ring_2 96 138 IPR001841 -
Vian5g00495 142 SUPERFAMILY RING/U-box 89 142 - -
Vian5g00495 142 CDD RING-H2 96 139 - -
Vian5g00495 142 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 36 140 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00495 88 142 C3H Transcription Factor Family AT5G41440 47.273 2.61e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00495 K22753 - pvu:PHAVU_007G097900g 126.716