LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00479	ATGGGGAAAAGTGGAGTACTTAGTCATTGGCACCTTCACGATGTTCCTCCTGGCATTGGATGCAGACTTTTGAATGGCGGCAACAACTTCCTTGGTCTTGCCAACTCCGATGCAATCTTGGCCGTTTTTGTTGCCGACAATGAAGACAGCTCTGAAGCGCAACTGCTTCCCTCCCTTAAAAACTTTCGTCACCCTTCTCACCTGGACCACCCTATCTTCGAACCCGTCGCGGACCTTCTCCTTCTTCGAAGGCTGCTGCCATTGTTTCGGGAAATCAAGGAGCTAGGGTTTTCCAATCGTGAGATGAGGAGAGAGATCTCGCTGGACCTGAGGATTCTGGGGATGGAAATTGGAGAGCTTACATGGTGTTTGAGACTGATAGAGAGTTTGAAATGCAGAGAAAGTATCAGAGAGGGTTATAGGGTGATTTGTTACGGGGTTGGGGATGTTGCAAGGAAGGTTGAGTTTCTGGTGGAGAGGATGAAATGTAGTGTGGAGTGTTTGGCTAAGGTGCCTAAATACTTGGGTGTGAGTTTTGAGAAGCAGATTGTGGCCAAGTATAGTGTGGTGGAGTGTTTGAGGAGGAAGGGTGCCATTGGGTTTGAGTTTGGGTTGAAGGATTTGGTTATGCCTTCTAGGCTTAGTTAA	648	0.4784	MGKSGVLSHWHLHDVPPGIGCRLLNGGNNFLGLANSDAILAVFVADNEDSSEAQLLPSLKNFRHPSHLDHPIFEPVADLLLLRRLLPLFREIKELGFSNREMRREISLDLRILGMEIGELTWCLRLIESLKCRESIREGYRVICYGVGDVARKVEFLVERMKCSVECLAKVPKYLGVSFEKQIVAKYSVVECLRRKGAIGFEFGLKDLVMPSRLS	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00479	215	Pfam	mTERF	142	198	IPR003690	GO:0003690\|GO:0006355
	Vian5g00479	215	Gene3D	Transcription termination factor 3, mitochondrial	63	213	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00479	Vian-Chr5	13559859	13565968	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Vian5g00479		mTERF	6.8e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00479	-		-	vum:124840038	211.075