LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g00425	ATGAACCCTTTAACACTGGTGAAGCGCACTCAGAATATCAACGCCAGAGAAGCTACACTCGGAATTGGCGAACAAGCTTCGTGGCACGCCAAGTACAAAGATTCCGCTTACGTATTCGTCGGTGGCATTCCCTTCGATCTCACCGAGGGTGACCTGCTCGCCGTTTTTGCTCAATATGGGGAGGTTGTTGATGTTAATCTCGTTAGAGACAAGGGCACCGGAAAATCAAAGGGTTTTGCGTTTCTTGCGTATGAGGATCAAAGGAGCACAAATCTTGCTGTGGATAATTTAAATGGGGCTCAGATTATGGGTAGAATTATTAGGGTGGACCATGTTGACAAGTACAAGAAGAAAGAGGAAGAAGACGAGGAGACAGAGCGGCAGAAGAGGGAGGCACGGGGCGTTTGTCGTGCGTTTCAAAGGGGTGATTGTACTCGTGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAAGAGCTGCAAATACAGGTTGGGGTCAGAAAGAAGACAATCCAAAATGGGGTCACGACAAATTTGAGGGTCCCAAAAAAGAGAGGGGATTTGGCACCAATCAACCAAATCATAATTCAGAAACTAGAGACAGAGATTCACGTTCTAAAGCCCGTTCCAATGATGCTGCATTCGAGAACCAACCTAAGAGAAGTGATAGAGAAGAGAGGTCAAGGCGGTGGCGTGATGATGATGATACATATAAGGGAAGGGAAAATAATAATAGAAGAGAAGAGAAAGGATCAAGAAGGTATGGAGATGATGAATTTGAACATAATTCGAGAGAAGAGCGATATAGGAGAGAAGAAAAGAAATCAAGAAAGGATGATTACGATGATATTCCTGAGCAAACAGATCATCGTAGAAGGGAAGACAAGAGGTCAATAAAGCCAGATGATGGTAAGTATGAACTCAAGTTGAGAGATTCAGACATAAGGGAAGATAAAGGACCCCGGAGGAAGGATGAGGATGATTTTGTAAGCAAGGCAAGAGAACCTCATAGTAACAGGGAAGACAGAAGATCTCGAAAACACAGTGAAGATGAATCTGCACCAAGGTCAAGAGAAGATTATGATAGGAAGCAAGATAACAGGTTTTATAGAAGTGATAGTGATAGACCAGAGTCAAAAGTAAGACATGATTTTGAGAGGAGGGAAGAGAAAAGGTCAAGAAGGTAA	1185	0.4338	MNPLTLVKRTQNINAREATLGIGEQASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQIMGRIIRVDHVDKYKKKEEEDEETERQKREARGVCRAFQRGDCTRGASCKFSHDEQRAANTGWGQKEDNPKWGHDKFEGPKKERGFGTNQPNHNSETRDRDSRSKARSNDAAFENQPKRSDREERSRRWRDDDDTYKGRENNNRREEKGSRRYGDDEFEHNSREERYRREEKKSRKDDYDDIPEQTDHRRREDKRSIKPDDGKYELKLRDSDIREDKGPRRKDEDDFVSKAREPHSNREDRRSRKHSEDESAPRSREDYDRKQDNRFYRSDSDRPESKVRHDFERREEKRSRR	394

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g00425	394	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	135	155	IPR000571	GO:0046872
	Vian5g00425	394	FunFam	Uncharacterized protein	127	204	-	-
	Vian5g00425	394	SUPERFAMILY	CCCH zinc finger	133	155	IPR036855	GO:0046872
	Vian5g00425	394	MobiDBLite	consensus disorder prediction	154	394	-	-
	Vian5g00425	394	MobiDBLite	consensus disorder prediction	195	394	-	-
	Vian5g00425	394	SMART	rrm1_1	37	110	IPR000504	GO:0003723
	Vian5g00425	394	SUPERFAMILY	RNA-binding domain, RBD	26	116	IPR035979	GO:0003676
	Vian5g00425	394	Gene3D	-	133	208	-	-
	Vian5g00425	394	FunFam	Zinc finger CCCH domain-containing protein 25	26	130	-	-
	Vian5g00425	394	SMART	c3hfinal6	132	156	IPR000571	GO:0046872
	Vian5g00425	394	Coils	Coil	115	135	-	-
	Vian5g00425	394	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	36	114	IPR000504	GO:0003723
	Vian5g00425	394	Gene3D	-	26	132	IPR012677	-
	Vian5g00425	394	ProSiteProfiles	Zinc finger C3H1-type profile.	130	157	IPR000571	GO:0046872
	Vian5g00425	394	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	38	107	IPR000504	GO:0003723
	Vian5g00425	394	PANTHER	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	1	261	-	-
	Vian5g00425	394	MobiDBLite	consensus disorder prediction	169	184	-	-
	Vian5g00425	394	CDD	RRM_ist3_like	27	113	IPR045844	GO:0000398\|GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g00425	Vian-Chr5	11196388	11198942	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian5g00425	35	109	Eukaryotic Initiation Factors Gene Family	AT2G36660	29.333	6.36e-06	46.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g00425	K13107		-	gmx:100814734	506.908