Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00420 ATGGCTGAGTCACCTCATTCGTCAGGCGATGAAGTCCCCACCACTTCTAGACGGATGAGAGGAGCAACGAGGTTACGACAGCTTATACTTAGAAGAAATGCAGGTGAGAGGACACCTGTCATTATTGACGTGGTCACTGGAGTTGCATCTGGCCCAAATGCAGATGTATTTAGGTCTTACCTTGGAGTATTGGCACGTGATCGTATCTCTATACTTACTCCATCCTTTGACCATGTTTCTGAGGCTGATCGGAATCTTATCTGGCAAGATCTATTGATAACATTTGATATGCCAAACGTCGAGAGCTTAAGGAATAAGTGTTTATCTGCAATTGCAGAAAGATTTCGAGGGTTTAAGACAAAAATGACAGCTTCGTTCATCCGAGGCGTGGCAGAGTTGTATGATGAAGTTGCTGAAATGGTTGCGCGCCAGTTCCAACAGCATTATGAGGATTATGGCAATCGTCCTCCGCCATCTCCTGTAGCGGAACATGTTTTGCCCCCTACAGGTAGAAGTGGTAAAGGAAGTTGTTCAGCTGCCGGTGCTCTAGGGGATGACATGGATGAAACTCGTCCATATGAGGTCAAGGTCACGGTGGATGAAGTTGTCATAGCAGATGTCGTTCTTCCTGTGCCTACAGATGAGTTCTTCACTGTGGAAGAAACATTTAAGTCCTTTGTCGCCTGGCCTAGACATTTGGTTGGCGATGTATCTAATCCCCCGGTAAACACTCGAGGAATAGTGTTTGTTCTAGCAATCACAGGAATAATCTTCCACAAGAAGCATAACCAAGCAAAAAGAAAAGCAAAGGAGGCTAAAATTAATAAGAGAAAAGAAGTCTCAAGTGTGAAAGCCAGTGCTTTATCATCAAGAATCTTCACTAGCAGAGAGATAAGAAAGGCAACAAACGATTTCTCCCGAGAAAATCTGATTGGAATTGGTGGATTCGGTGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGCTTTCCATCAAGCGTGCGAATCTTGGAAGCACCAAAGGCATTGATCAGATGCGAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAAACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTGATATATGAGTACGTTTCAAATGAGACCCTTTTTGATTACCTTCATCGCCATTCTTGTGGCACAAGGGAACCCCTGAAATTGCACCAAAGACTCAAAATTGCACACCAAAGAGCCGAAGGGCTTTCATATCAACATCAAAGTAAATTAGAATAG 1281 0.4411 MAESPHSSGDEVPTTSRRMRGATRLRQLILRRNAGERTPVIIDVVTGVASGPNADVFRSYLGVLARDRISILTPSFDHVSEADRNLIWQDLLITFDMPNVESLRNKCLSAIAERFRGFKTKMTASFIRGVAELYDEVAEMVARQFQQHYEDYGNRPPPSPVAEHVLPPTGRSGKGSCSAAGALGDDMDETRPYEVKVTVDEVVIADVVLPVPTDEFFTVEETFKSFVAWPRHLVGDVSNPPVNTRGIVFVLAITGIIFHKKHNQAKRKAKEAKINKRKEVSSVKASALSSRIFTSREIRKATNDFSRENLIGIGGFGEVFKGTFDDGTVLSIKRANLGSTKGIDQMRNEVRILCQVNHRSLVKLLGCCLELEHPLLIYEYVSNETLFDYLHRHSCGTREPLKLHQRLKIAHQRAEGLSYQHQSKLE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00420 426 FunFam receptor-like protein kinase FERONIA 266 380 - -
Vian5g00420 426 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 187 423 IPR045274 GO:0007166
Vian5g00420 426 SUPERFAMILY Protein kinase-like (PK-like) 278 421 IPR011009 -
Vian5g00420 426 ProSiteProfiles Protein kinase domain profile. 305 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00420 426 Pfam Protein tyrosine and serine/threonine kinase 308 424 IPR001245 GO:0004672|GO:0006468
Vian5g00420 426 Gene3D Transferase(Phosphotransferase) domain 1 282 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00420 Vian-Chr5 10864402 10873655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00420 250 423 Receptor kinase-like Gene Family AT5G02070 56.818 1.00e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian5g00420 PK_Tyr_Ser-Thr 2.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00420 - - vum:124826816 317.775