Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00409 ATGAAGAAGAAACTTGTTTTCTACAGAGGAAAACCGCCTCATGGATCCAGAACCGATTGGATCATGCACGAGTATCGCCTCCTTAACGCTCCGTCTCAGGTTCCCATGGAAAACTGGGTTTTGTGTCGCATATTTTTGAAGAGGAGAAGTGGTTGTAGAAACGGGGAGGAGAAGGAGATGGAGAGTTTGAGAGGCGAAGTGGATAATAGGAAGTACCTTGACACGAAAAATAATGAATTTCCCGGTTCTATGAACTTAGCAGCAAATTAA 270 0.437 MKKKLVFYRGKPPHGSRTDWIMHEYRLLNAPSQVPMENWVLCRIFLKRRSGCRNGEEKEMESLRGEVDNRKYLDTKNNEFPGSMNLAAN 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00409 89 SUPERFAMILY NAC domain 1 47 IPR036093 GO:0003677|GO:0006355
Vian5g00409 89 Gene3D NAC domain 1 51 IPR036093 GO:0003677|GO:0006355
Vian5g00409 89 ProSiteProfiles NAC domain profile. 1 47 IPR003441 GO:0003677|GO:0006355
Vian5g00409 89 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 59 - -
Vian5g00409 89 Pfam No apical meristem (NAM) protein 1 27 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00409 Vian-Chr5 10332174 10336777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00409 1 54 NAC Transcription Factor Family AT5G13180 69.643 3.12e-22 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian5g00409 NAM 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00409 - - var:108321768 155.221