Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00400 ATGGACGAGAATCAAGAGATTGAGAGGTTTGGAATGGAGAATGATTATGAGGGTGGTCAATGGATTGGTGGAGCATACGATACTGAAGAAGCTGCAGCCCGTACCTATGATCTTGCAGCCCTGAAGTACTGGGGAAAAGATGCAGTTTTGAATTTTCCGATAGGAAATTACACAAAGGATCTTGAGGAAATTGACAAAGTTTCAAAAGAAGAATATTTAGCTTCTTTGCGGCGCCAAAGCAGTGGTTTTTCTAGAGGCATATCTAAGTATCGTGGGGTTGCTAGGCATCATCATAATGGGCGTTGGGAAGCGCGCATAGGAAGAGTGTGTGGAAACAAGTACCTTTACTTGGGAACATATAAAACTCAAGAGGAGGCAGCTGTGGCATATGACTTAGCAGCAATAGAGTACAGAGGACTGAATGCAGTGACCAATTTTGACATAAGCAACTACATTGACAAAAGGAAAAAGGACCAAACTCAAGAAACAGTAGCACAAAGAGAAACAGTTCCCAACTCCTCAGACTCAGAAGAAGCAGAAGTAGAACAACAACAGAACACAACTACGCCAACCCCTTCTGAGAATCTGCACATGGCAGCAGTGCAGCACAACCAAGTTCCACACACACCCCTTAGGGAAGAGTCATCATCACTGGTCACTATTATGGATCATGTGCTTGAACAGGATCTGCCATGGAGCTTCATGTACACTGGGGTGTCTGAGTTTCAAGATCAAGACTTTGCTTTCAGCAAAGCTGAGGATTTAGTAGCCATGTTTGGAGGTGGTTCAGGGTTTGAGGAAGACATTGATTTTCTGTTGAGCACAGAGCCTTGTTGTGAGACTGGGAGTGATGTCAATATGAGAGCAGTTTTTGATAGCATTGAATGTGGTGAGGGTGGTGGAAACATGGTGCATGGGGATAACAAGCAGAAGGAGATACTATCTTTTGCATCTTCTTCTCCATCATCTACAACAACTTCAGTTTCTTGTAACTATGCTTAG 1002 0.4351 MDENQEIERFGMENDYEGGQWIGGAYDTEEAAARTYDLAALKYWGKDAVLNFPIGNYTKDLEEIDKVSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDLAAIEYRGLNAVTNFDISNYIDKRKKDQTQETVAQRETVPNSSDSEEAEVEQQQNTTTPTPSENLHMAAVQHNQVPHTPLREESSSLVTIMDHVLEQDLPWSFMYTGVSEFQDQDFAFSKAEDLVAMFGGGSGFEEDIDFLLSTEPCCETGSDVNMRAVFDSIECGEGGGNMVHGDNKQKEILSFASSSPSSTTTSVSCNYA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00400 333 ProSiteProfiles AP2/ERF domain profile. 1 53 IPR001471 GO:0003700|GO:0006355
Vian5g00400 333 ProSiteProfiles AP2/ERF domain profile. 89 147 IPR001471 GO:0003700|GO:0006355
Vian5g00400 333 SUPERFAMILY DNA-binding domain 88 149 IPR016177 GO:0003677
Vian5g00400 333 Gene3D AP2/ERF domain 88 149 IPR036955 GO:0003700|GO:0006355
Vian5g00400 333 Gene3D AP2/ERF domain 6 55 IPR036955 GO:0003700|GO:0006355
Vian5g00400 333 FunFam AP2-like ethylene-responsive transcription factor 88 149 - -
Vian5g00400 333 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 209 - -
Vian5g00400 333 MobiDBLite consensus disorder prediction 157 193 - -
Vian5g00400 333 Pfam AP2 domain 88 139 IPR001471 GO:0003700|GO:0006355
Vian5g00400 333 SUPERFAMILY DNA-binding domain 17 54 IPR016177 GO:0003677
Vian5g00400 333 SMART rav1_2 15 59 IPR001471 GO:0003700|GO:0006355
Vian5g00400 333 SMART rav1_2 89 153 IPR001471 GO:0003700|GO:0006355
Vian5g00400 333 MobiDBLite consensus disorder prediction 164 193 - -
Vian5g00400 333 CDD AP2 88 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00400 Vian-Chr5 9897779 9916673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00400 24 284 AP2-EREBP Transcription Factor Family AT3G54320 50.505 2.51e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian5g00400 AP2 2.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00400 - - gmx:100527432 453.751