Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00398 ATGAACGTTGAGGCAGTAGATGAAGGGGAAAACAGTGATAGACCTGCTTCTGGAAATGTTGAAACTGAAAAAGATGAGGAACAAAATATGAAAGTAAACTTGGCTGAAAGAGAAGTAAATAACCAAGATGATGATGCTTGTAGGAAGCCACTTGTGGGCATGCTGTTTGAATCTGAAGATTTTGCAAAATCATTTTATGATGCATATGCAAGAGATGTAGGATTTAGCACACATGTTGGTCAATTCAGCCGTGCTAAGCCTGATGGTCCAATTATAACTTGGGACTTTGCTTGTTCCAGAGAGGTATTTAAAAGGAAGAACATAGTAAGTTGCAATGCAATGCTTAGGGTAGAGAGAAAAGATGCAAACTGGATAGTGACAAAATTTGTTGAGGACCATAACCATTCCCTTGCTTCCTCTAGAAAGTTACAGAACCGTCAACCCAGTAGACATTCTGTAGGTGCTGCTAGGAATGTTATAGCGACATTTGATGCCCGTAATGAATCTTGTGCTTCCTTGAATGGAAATCATTCAGAGCCCATTAGTTCTGTTAGGAACTCTTTTCCAGCAGAACAATGTCATCCAATGAGAAACATTGGCTCACTTACCTATGCAAGATCTTCTCAAAAGAGGACCCTTGGAAGAGATGCTCAAAATCTTCTGAATTATTTTAAGAAGATGCAGGGTGAAAACCCTGGCTTCTATTATGCAATACAACTAGATGATGAAAACCGTATGACCAATGCATTCTGGGCGGGTGCAAGGTCAAGAACAGCTTATAATTACTTTGGTGATGCTGTAATCTTTGACACGATGTATAGACCAAATCAATACCAAATCCCAGTTGCTCCATTTACAGGATTCAATCACCACGGCCAAATGGTTTTATTTGGTTGTTCATTACTTCTAGACGAATCGGAGTCTTCCTTTACATGGCTATTCAAGACGTGGCTATCTGCTATGAATGATCGACCACCTGTTTCCATAACCACAGACCAAGATAGAGCCATACAAGCAGCAGTTTCTCACGTGTTCCCGGAAACTCGCCACTGTATTTGTAAATGGCACATTTTAAGAGAAGGTCAAGAAAGATTGGCTCATATTTACCTTGCTCATCCTTCACTCTATGGAGATCTATATGGCTGTATCAATTTTTCTGAGACTACTGAGGATTTTGAATCAACATGGAAGTCTCTTCTGGATAAATATGATCTCCAGAAAAATGATTGGCTTCAGGCAGTGTATAATGCTCGTAAACAATGGGCCCCTGTTTACTTTCGTGATACTTTCTTTGCTGCTATTACTTCAAACCACGGGGTAAACTCCTTTTTTGATGGCTATGTAAATCAACAGACAACCATACCTTTATTCTTTAGGCAGTATGAAATATCACTTGAACATTCATTGGAAAAAGAAATAGAAGCAGATTATGAGACTATTTGTAACACGCCTGTACTGAGGACTCCATCACCAATGGAACAACAGGCAGCAAATATGTACACTAACAAGATTTTTGCAAAGTTTCAGGAGGAACTGGTGGAAACTTTTGCATATACTGCAAGTAATGTTGACAATGATGGTGTTATCAGTAAATACAGGGTTGCAAAATATGAACATGATCACAAGGCATACATGGTCACATTAAATATGTCTGAAATGAAGGCAAACTGCAGCTGTCAGATGTTTGAATACTCTGGCATTCTTTGTCGACATGTATTGACTGTTTTCACTGTAACAAATGTCCTTACCCTTCCATCACACTACATTTTAAAGCGATGGACAAGGAATGCAAAATCTGGTTTTGGAACTGATGAAAAAACAACAGGTCCACTTAACATTGAAAATCTCACTATACGTTTTAATAGTTTATGTCAAGAAGCCATTAAGCTTGCTGAAGAAGGGGCAATTTCCGTTGAGACTTGTAATGTAGCAATGAATGCTTTGAGAGAGGGTGCTAAAAGGGTAGGTATTATGAAGAAAAATATTGCAAAAGTCAAACCTACAAACACTCATGGTAATGGATGCTGTCCGGAAGACAATAGCAAGAAGAGCCCGTCATCAATTTCGGATGTCATCCCATCACTGTGGCCTTGGCAAGATTCAGTGTCAAATCACTTGAATCATAGTGGCCTTGGGCTTCCTGTTACTGATCTGAATCATCCTACTATGGCTCCTGTTTCTATTCACCAGGATGGTGGCCCTCCAGATAACTCTGTTGTCCTCATGTGTTTCAAGTCTATGACTTGGATCATCGAAAATAAGAATTCAAGCCAATCTAATAAAATTGCAGTCATCAACATGAAGCTGCAAGATTATGGTAAGAGCCCTATAGGAGAGACAGAAGTGCAATTCAGGGTGACAAGGGTAACTTTGGAGCCTATGTTGAGATCAATGACTTACATTAGTCAACAGTTAAATGCACCAGTCAATAGAGTTGCTGTCATCAATCTGAGGTTCTACATCATCCAGCTCCAGGATACGAAGACAACTACTGGGCAAACTGAGGTGAAATTCCAAGTTTCTAGAGATACTCTCGGCTCCATGCTGAGATCTATGGCCTACATCCGGGAGCAGCTCTAG 2580 0.3988 MNVEAVDEGENSDRPASGNVETEKDEEQNMKVNLAEREVNNQDDDACRKPLVGMLFESEDFAKSFYDAYARDVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNIVSCNAMLRVERKDANWIVTKFVEDHNHSLASSRKLQNRQPSRHSVGAARNVIATFDARNESCASLNGNHSEPISSVRNSFPAEQCHPMRNIGSLTYARSSQKRTLGRDAQNLLNYFKKMQGENPGFYYAIQLDDENRMTNAFWAGARSRTAYNYFGDAVIFDTMYRPNQYQIPVAPFTGFNHHGQMVLFGCSLLLDESESSFTWLFKTWLSAMNDRPPVSITTDQDRAIQAAVSHVFPETRHCICKWHILREGQERLAHIYLAHPSLYGDLYGCINFSETTEDFESTWKSLLDKYDLQKNDWLQAVYNARKQWAPVYFRDTFFAAITSNHGVNSFFDGYVNQQTTIPLFFRQYEISLEHSLEKEIEADYETICNTPVLRTPSPMEQQAANMYTNKIFAKFQEELVETFAYTASNVDNDGVISKYRVAKYEHDHKAYMVTLNMSEMKANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSGFGTDEKTTGPLNIENLTIRFNSLCQEAIKLAEEGAISVETCNVAMNALREGAKRVGIMKKNIAKVKPTNTHGNGCCPEDNSKKSPSSISDVIPSLWPWQDSVSNHLNHSGLGLPVTDLNHPTMAPVSIHQDGGPPDNSVVLMCFKSMTWIIENKNSSQSNKIAVINMKLQDYGKSPIGETEVQFRVTRVTLEPMLRSMTYISQQLNAPVNRVAVINLRFYIIQLQDTKTTTGQTEVKFQVSRDTLGSMLRSMAYIREQL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00398 859 ProSiteProfiles Zinc finger SWIM-type profile. 544 580 IPR007527 GO:0008270
Vian5g00398 859 MobiDBLite consensus disorder prediction 673 687 - -
Vian5g00398 859 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 655 IPR031052 GO:0006355
Vian5g00398 859 Pfam MULE transposase domain 267 359 IPR018289 -
Vian5g00398 859 SMART 26again6 555 582 IPR006564 GO:0008270
Vian5g00398 859 MobiDBLite consensus disorder prediction 668 687 - -
Vian5g00398 859 MobiDBLite consensus disorder prediction 1 29 - -
Vian5g00398 859 Pfam FAR1 DNA-binding domain 64 138 IPR004330 -
Vian5g00398 859 Pfam SWIM zinc finger 546 578 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00398 Vian-Chr5 9871324 9885548 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vian5g00398 MULE 2e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00398 - - gmx:100789242 1539.63