Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00394 ATGGCGGAGGTCATGAATGTGCCTCCAGAATCCCTCGACAAATCCCCTTCCTCCGATGCTCCCCCTCCTCCGCCGCCGCCTCCACCTCCGACTCAGCCCTCCCCTGCTGCGGACGACCTCCCTCCCCCGCCCCCGCCGCCGCATTACCAGCCCCGGCGAAGAGACCGCAGAGACGACAGGGATTTCGATCGCCCTCCCAACCGCCGCGGCGATTACTATGACCGCAACGCGTCGCCGCCTCGAGACAGAGACCGGGACAGGGACAGGGATTTCAAGCGCCGACGTAGCCCGAGCCCTCCCCACCGCGACCAGCGGTATTCTCCGGCACCGCGGCGTTCGCCTCCGCCGTACAAGCGGTCGCGCCGGGGGAGTCCTCGGGGCGGATATGGACCTGATGATAGACATGGTTATAATTATTATGGTGCTTATGAACGGGGATTGGGTGGAAGAGGTGGTTATGCAGATGAGAAGTCCTATGGGAGGTTTGGACCACGTTCTGCTGGGGGTTATCAGAATGGGATTTCTGATGTGGAATCCAATCGTGGTTATGGAGACATGCCAAGCCAAAGGGAGGGGCTGATGTCCTATAAGCAGTTCATTCAGGAGCTTGAGGATGATATACTACCCGCTGAAGCAGAGCGTAGGTATCAAGAATACAAATCAGAGTATATTTCAACCCAAAAACGAGCTTATTTTAATGCTCATAAGGATGAAGAGTGGTTGAAGGATAAATATCATCCAACAAATTTGCTTACAGTCATTGAAAGGAGGAATGAAAATGCTCGACAGCTAGCAAAGGAATTTTTGCTTGATTTACAGAGCGGAACATTAGAACTAAATCCTGGTTTGGAGGCCTCTGTATCCAACAAATCAGGGCAAGCTAGTGAGCCAAATTCAGAGGAGGAAGCAGACACTGGAGGCAAACGAAGAAGGCATGGAAGGGGACCTAATAAAGAAAATGATTTCTCAGCTGCTCCAAAGGCTCACCCAATCAGTTCTGAACCAAGAAGGATACAGGCAGATGTTCAACAGGCTCAGGTTCTTGTCCGGAAGCTTGATGCTGAAAAAGGGATTGAAGATAATACTTTGTGCAGCAGCAGCGATCATAATAAAAATGATGACAAGGCACACAGTGGATCTGTGGGCCCCATAGTAATTATTCGAGGCCTAACATCTGTTAAGGGTTTAGAAGGTGTCGAGCTTCTGGATACACTTATAACTTACCTTTGGCGGATTCATGGTGTGGATTATTATGGCATGATTGAGACTAACGAGGCTAAGGGCTTTAGGCATGTGAGACCAGAAGGGACGGGGCATGAAGAAACAGGTAAATCAGGGTCGGACTGGGAGAAGAAGCTTGATTTATTTTGGCAAGGAAGGCTGAATGGTTTGGATCCCTTGGAAATAATGACTGCTAAGGAGAAGATAGATGCTGCAGCAATGGAAGTATTGGATCCATATGTTAGAAAAATTAGGGATGAAAAGTATGGATGGAAGTATGGATGTGGAGCCAAGGGCTGCACAAAGCTTTTTCATGCTGCTGAATTTGTGCACAAACATCTGAAGCTCAAACACCCAGAGCTTGTTCTGGAACAGACTACGAAAGTACGAGAGGATCTCTACTTTCAAAATTACATGAATGATCCAGATGCTCCTGGCGGGACACCCATAATGCAGCAATCTCAGAAGGACAGACCCTTAAAGCGAAGATTAGGTATTGAGGGTCGATTAAGAGATGATCGTGGTAATAGACGAGACCATGATCGGAATGACAGAATGAATGGAGATAGGCCTGATAATTCCCCATCTAGTGAAAGACAGTCACTTGAGATGGGAAACCGTGATGAAGCAATGTATGATTCTTATGCAGGGCCAGCCATACCTCCATTTGCCTCAGATATACCTCCTCCACCAGTGTTGATGCCTGTACCTGGTGCCGGGCCTTTGGGACCCTTCGTTCCTGCTCCTCCAGAAGTTGCAATGCAGATGTTAAGAGATCAAGGAGGACCAACATCATATGATGCCTCTGGAAGAAAGATGCGGGGTGGCCCTCATTTGGGTGGTGCAGCACCAATTATTGCTGTTCCTCCAAACTTTAGACCAGATCCTCGGCGGATGCGAAGTTATCAAGATCTGGATGCCCCAGAGGACGAGGTTACTGTTATAGACTATCGGAGTTTGTAG 2184 0.4908 MAEVMNVPPESLDKSPSSDAPPPPPPPPPPTQPSPAADDLPPPPPPPHYQPRRRDRRDDRDFDRPPNRRGDYYDRNASPPRDRDRDRDRDFKRRRSPSPPHRDQRYSPAPRRSPPPYKRSRRGSPRGGYGPDDRHGYNYYGAYERGLGGRGGYADEKSYGRFGPRSAGGYQNGISDVESNRGYGDMPSQREGLMSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRAYFNAHKDEEWLKDKYHPTNLLTVIERRNENARQLAKEFLLDLQSGTLELNPGLEASVSNKSGQASEPNSEEEADTGGKRRRHGRGPNKENDFSAAPKAHPISSEPRRIQADVQQAQVLVRKLDAEKGIEDNTLCSSSDHNKNDDKAHSGSVGPIVIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMIETNEAKGFRHVRPEGTGHEETGKSGSDWEKKLDLFWQGRLNGLDPLEIMTAKEKIDAAAMEVLDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVLEQTTKVREDLYFQNYMNDPDAPGGTPIMQQSQKDRPLKRRLGIEGRLRDDRGNRRDHDRNDRMNGDRPDNSPSSERQSLEMGNRDEAMYDSYAGPAIPPFASDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQMLRDQGGPTSYDASGRKMRGGPHLGGAAPIIAVPPNFRPDPRRMRSYQDLDAPEDEVTVIDYRSL 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00394 727 ProSitePatterns Zinc finger C2H2 type domain signature. 502 525 IPR013087 -
Vian5g00394 727 MobiDBLite consensus disorder prediction 665 701 - -
Vian5g00394 727 MobiDBLite consensus disorder prediction 1 157 - -
Vian5g00394 727 MobiDBLite consensus disorder prediction 563 599 - -
Vian5g00394 727 PANTHER ARSENITE-RESISTANCE PROTEIN 2 52 725 IPR039727 GO:0006397
Vian5g00394 727 MobiDBLite consensus disorder prediction 281 339 - -
Vian5g00394 727 MobiDBLite consensus disorder prediction 301 318 - -
Vian5g00394 727 MobiDBLite consensus disorder prediction 281 300 - -
Vian5g00394 727 MobiDBLite consensus disorder prediction 544 611 - -
Vian5g00394 727 Pfam SERRATE/Ars2, N-terminal domain 197 278 IPR021933 -
Vian5g00394 727 MobiDBLite consensus disorder prediction 15 48 - -
Vian5g00394 727 Pfam Arsenite-resistance protein 2 442 596 IPR007042 -
Vian5g00394 727 MobiDBLite consensus disorder prediction 49 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00394 Vian-Chr5 9724160 9731070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00394 79 727 C2H2 Transcription Factor Family AT2G27100 63.959 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00394 K27103 - gmx:100788714 1097.8