Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00393 ATGGGGTATGAAACCAGAACACTCTCAGATGAGTATGAAGTCTCAGATGTTCTAGGAAGAGGTGGATTTTCTGTTGTTAGAAAAGGCACAAGAAAATCAAGCAGTGACACCAAAAGCCTTGTGGCCATCAAAACTTTGAGAAGATCAGGCACTGCCTCAAACTCCAACCACCCTTCTGGGTTTCCAAGACCAAAGGGTGCAGAGAAGAGCTCAGCTGCTATGATGGGGCTCCCGTGGAGACAAGTCTCAGTCTCAGATGCCTTGCTCACCAATGAGATTCTTGTGATGAGGAGAATAGTGGAAAACGTTTCACCTCACCCTAATGTGATTGACCTCTATGATGTGTATGAGGACTCAAATGGAGTGCACCTTGTGTTGGAGCTGTGTTCTGGTGGAGAACTGTTTGATAGGATTGTAGCACAAGATAGGTACTCAGAGACTGAAGCTGCAGGTGTGGTTCGCCAGATAGCTTCAGGATTAGAGGCTATTCATAGAGCTAACATTGTGCACAGGGACTTGAAGCCTGAGAATTGTCTTTTCTTGGATGTGAGGAGGGATTCTCCTCTTAAGATCATGGATTTTGGTTTGAGTTCTGTTGAAGAATTCACTGACCCAGTTGTTGGTTTGTTTGGATCCATTGATTATGTTTCACCAGAGGCTCTTTCTCAAGGGAAGATAACTACCAAGAGTGACATGTGGTCTCTTGGGGTGATTCTATACATCTTACTCTCTGGGTATCCACCTTTCATTGCTCAGTCTAATCGCCAGAAACAACAAATGATAATGAATGGGAACTTCAGTTTCTATGAGAAGACATGGAAGGGCATTACTCAATCAGCAAAGCAACTAATTTCAGATCTTCTGACAGTTGATCCTAGTAGGAGACCTAGTGCTCAAGATGTATTGTACACTCTTACCAACCTTCTGAGTCATCCATGGGTGGTAGGTGACAAGGCCAAGGATGATGCAATGGACCCTGAGATTGTCTCAAGATTGCAGAGCTTCAACGCAAGACGCAAACTGCGAGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATCTTCCTCAGAACCAAAAAGCTGAAATCTTTGGTAGGAACACATGATCTCACAGAAGAGGAAATTGAAAACCTCAGGATAAATTTTAAGAAAATATGTGTGAGTGGAGACAATGCCACTCTAAGTGAGTTTGAAGAGGTGCTGAAAGCAATGAATAGGCCATCACTGGTCCCTCTAGCACCACGAATATTTGACTTGTTTGACAACAACCGTGATGGAACAGTTGACATGAGAGAGATTCTATGTGGCTTTTCCAGCTTCAAAAACTCCAAAGGAGATGATGCTCTTCTTTTGTGCTTCCAGATGTATGACACAGATCGATCAGGCTGCATCACCAAGGAAGAAGTCGCATCCATGCTCAGAGCTTTACCAGAAGAGTGTTTGCCAGCTGATATCACTGAACCTGGGAAATTGGATGAGATATTTGACAGAATGGATGCCAACAGTGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCCATGCAGAGAGATAGCTCTCTTCAAGACCTTGTTCTCTCTTCTCTAAGACCACAATCATAG 1602 0.437 MGYETRTLSDEYEVSDVLGRGGFSVVRKGTRKSSSDTKSLVAIKTLRRSGTASNSNHPSGFPRPKGAEKSSAAMMGLPWRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAAGVVRQIASGLEAIHRANIVHRDLKPENCLFLDVRRDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGITQSAKQLISDLLTVDPSRRPSAQDVLYTLTNLLSHPWVVGDKAKDDAMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGTHDLTEEEIENLRINFKKICVSGDNATLSEFEEVLKAMNRPSLVPLAPRIFDLFDNNRDGTVDMREILCGFSSFKNSKGDDALLLCFQMYDTDRSGCITKEEVASMLRALPEECLPADITEPGKLDEIFDRMDANSDGKVTFDEFKAAMQRDSSLQDLVLSSLRPQS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00393 533 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 357 526 - -
Vian5g00393 533 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Vian5g00393 533 MobiDBLite consensus disorder prediction 46 60 - -
Vian5g00393 533 CDD EFh 453 516 IPR002048 GO:0005509
Vian5g00393 533 Pfam Protein kinase domain 90 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00393 533 Pfam EF-hand domain pair 449 516 IPR002048 GO:0005509
Vian5g00393 533 ProSiteProfiles EF-hand calcium-binding domain profile. 415 443 IPR002048 GO:0005509
Vian5g00393 533 Coils Coil 361 381 - -
Vian5g00393 533 SMART efh_1 448 476 IPR002048 GO:0005509
Vian5g00393 533 SMART efh_1 412 440 IPR002048 GO:0005509
Vian5g00393 533 SMART efh_1 490 518 IPR002048 GO:0005509
Vian5g00393 533 PRINTS Recoverin family signature 416 437 - -
Vian5g00393 533 PRINTS Recoverin family signature 506 526 - -
Vian5g00393 533 PRINTS Recoverin family signature 370 389 - -
Vian5g00393 533 PRINTS Recoverin family signature 440 459 - -
Vian5g00393 533 Pfam EF hand 417 432 IPR002048 GO:0005509
Vian5g00393 533 ProSiteProfiles EF-hand calcium-binding domain profile. 444 479 IPR002048 GO:0005509
Vian5g00393 533 Gene3D Transferase(Phosphotransferase) domain 1 135 357 - -
Vian5g00393 533 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Vian5g00393 533 SUPERFAMILY Protein kinase-like (PK-like) 5 315 IPR011009 -
Vian5g00393 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 491 - -
Vian5g00393 533 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 76 133 - -
Vian5g00393 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vian5g00393 533 SUPERFAMILY EF-hand 359 523 IPR011992 -
Vian5g00393 533 MobiDBLite consensus disorder prediction 46 69 - -
Vian5g00393 533 CDD EFh 415 474 IPR002048 GO:0005509
Vian5g00393 533 Gene3D Phosphorylase Kinase; domain 1 71 134 - -
Vian5g00393 533 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Vian5g00393 533 Gene3D Phosphorylase Kinase; domain 1 1 60 - -
Vian5g00393 533 ProSiteProfiles Protein kinase domain profile. 12 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00393 533 SMART serkin_6 12 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian5g00393 533 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Vian5g00393 533 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Vian5g00393 533 CDD STKc_CAMK 12 313 - -
Vian5g00393 533 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 isoform A 3 57 - -
Vian5g00393 533 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 134 331 - -
Vian5g00393 533 Gene3D - 358 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00393 Vian-Chr5 9690049 9694797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00393 88 519 EF-hand Containing Proteins AT3G10660 37.387 1.27e-78 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Vian5g00393 Pkinase 2.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00393 K13412 - gmx:732616 964.526