Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00379 ATGTCTTCCTTCAAATCTTATGGCAAAGTTGATGAATCAGAGCAAGCCATGCTCGAAGTTCGGCGCAAAACCCGAAAGAGAATCACGATCATAGCCTTGTCCACAATAGTCCTCATTGGAGTTTTGTGTGCTGCAGTGTTTGGAACAGTTGCTCATAACAACAACAAGAACTCAAATGATGCTGAAAACAATGCCGCTTCTGTTTCCAACTCAGTGAAGGCTGTTTGTGATGTGACACTCTACAAGGACGCCTGCTACAGCAGTCTTGGTTCTCTTGCACACTCGGGTCAGGTTCCACCTGAGGACTTGTTCTTGTTGTCTATTAAGGTGGCCTTAGCTGAGGCTTCTAAGGCTGCTCAGTATTTCTCTGAGAAAGGAGGGTTCAGTGGCTTGAATGTTGATGACAGGATCATGGAAGATTTTAAGAACTGCAAGGATCTTCTGGGTCTTGCAGTTGATCATTTGAATAGCTCTCTGGCTTCTGGTGGGAAGTTTTCCTTGGTTGATGTCTTGGAGGATCTCAGAACTTGGTTGAGTGCTGCAGGTACTTACCAGCAAACTTGCATTGATGGCATTGGAGAGGCAGAAGAAGCATTTAAGAGCAGTGTAATCAATATTCTGAAAAATTCAACAGAGTTCACCAGTAACAGTCTTGCCATCGTTACATGGCTTGAAAAGGCTGCAAGCAGTGTGAAACTGAGGCGCTTGTTGAGTACTTTGCCACACAAAGATGAAGAGCCAAAATGGCTTCATTCTAAAGATCGAAAGATGCTACAAGCTGATGATTTGAAGAAGAAAGCTAATATTGTTGTAGCCAAAGATGGCAGCGGAAATTTTAAAACAATCGCTTCTGCACTTGAAGATGTCCCTGAGAAAAGTGACAAGAGAACTGTGATCTATGTGAAGAAGGGGATTTACAATGAAAATGTGAGAGTGGAGAAGACCAAATGGAATGTCATGATCATTGGTGATGGTATGAACGCCACCATTGTATCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCCTCAGCAACATTTGGGGAGAAATGGATTCCAGCTTCGGGTGCCACCTTTAAATCTTCTCTCAGCAATAGCCTCTCCAATGGAGGTGAAGTTGTCTTTGCCATTAAGGTTCACAATCACAAACTCATTAAGCAGAATTCCCTTGCTCTCACTTTCTTTAAGAATCCTTTCACTTCTAGTGCTGCAATTGGATGA 1227 0.4311 MSSFKSYGKVDESEQAMLEVRRKTRKRITIIALSTIVLIGVLCAAVFGTVAHNNNKNSNDAENNAASVSNSVKAVCDVTLYKDACYSSLGSLAHSGQVPPEDLFLLSIKVALAEASKAAQYFSEKGGFSGLNVDDRIMEDFKNCKDLLGLAVDHLNSSLASGGKFSLVDVLEDLRTWLSAAGTYQQTCIDGIGEAEEAFKSSVINILKNSTEFTSNSLAIVTWLEKAASSVKLRRLLSTLPHKDEEPKWLHSKDRKMLQADDLKKKANIVVAKDGSGNFKTIASALEDVPEKSDKRTVIYVKKGIYNENVRVEKTKWNVMIIGDGMNATIVSGSLNFVDGTPTFSSATFGEKWIPASGATFKSSLSNSLSNGGEVVFAIKVHNHKLIKQNSLALTFFKNPFTSSAAIG 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00379 408 SMART PMEI_2 67 220 IPR006501 GO:0004857
Vian5g00379 408 PANTHER PECTINESTERASE 39 350 - -
Vian5g00379 408 Pfam Pectinesterase 268 350 IPR000070 GO:0030599|GO:0042545
Vian5g00379 408 Pfam Plant invertase/pectin methylesterase inhibitor 71 220 IPR006501 GO:0004857
Vian5g00379 408 SUPERFAMILY Pectin lyase-like 266 365 IPR011050 -
Vian5g00379 408 CDD PMEI-like_3 74 226 - -
Vian5g00379 408 FunFam Pectinesterase 68 225 - -
Vian5g00379 408 NCBIfam pectinesterase inhibitor domain 65 224 IPR006501 GO:0004857
Vian5g00379 408 ProSitePatterns Pectinesterase signature 1. 293 312 IPR018040 -
Vian5g00379 408 Gene3D - 263 394 IPR012334 -
Vian5g00379 408 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 226 IPR035513 -
Vian5g00379 408 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 224 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00379 Vian-Chr5 9082808 9087782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00379 1 349 Carbohydrate Esterase AT3G10710 50.997 3.16e-113 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00379 - - pvu:PHAVU_011G1890000 578.17